Table 2. P-values for middle sections.

Rank	Trans vs. Contr1		Trans vs. Contr2		Delet vs. Contr1		Trans vs. Delet
	Repeat	P-value	Repeat	P-value	Repeat	P-value	Repeat	P-value
1	IR	3.8E−179	IR	1.4E−180	IR	1.5E−147	H-DNA	1.9E−137
2	H-DNA	1.4E−142	H-DNA	4.9E−146	DR	7.8E−116	G4-DNA	4.0E−074
3	G4-DNA	1.6E−107	DR	4.2E−100	G4-DNA	8.8E−027	DR	6.6E−058
4	DR	6.1E−107	G4-DNA	3.9E−037	H-DNA	9.7E−011	IR	1.1E−018
5	Z-DNA	1.1E−005	Z-DNA	1.6E−013	Z-DNA	7.3E−002	Z-DNA	3.2E−002

P-values of Student's t-tests for differences in the number of PONDS-forming repeats in the middle sections of translocation, deletion, Contr1 and Contr2 breakpoints after Bonferroni correction for n multiple testing (n = 20 000).