Figure 3.

The assembly of simulated heterozygous genome. Pairwise genome alignment of the final assembly for simulated heterozygous genome with 0% LOH and its reference, C. parapsilosis CDC317. Synteny blocks have been coloured accordingly to the identity level between pair of query and target sequences. The assembled genome represent a mixture of two haplomes: 5% diverged (blue or violet) and identical (red) to reference genome. In addition, two short regions with divergence of 2–3% (green and cyan) are present in HE605206. The regions with intermediate divergence were likely assembled from very short contigs from both haplomes.