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Manhattan plots of marker-trait associations for grain protein content using various marker sets. (A) 379 genotyped SNP markers, (B) 4022 imputed SNP markers, (C) 263,531 imputed sequence variants, and (D) 1148 interpolated markers. Dashed horizontal line indicates FDR = 0.05 significance threshold. Plots shown are mapping results from all 761 individuals (not bootstrapped) with imputed sequence variants.
