Table 1.

Result summary of non-ribosomal rPCR and Miseq run

Virusa	Sample ID	Sample type	Cp values	% of enteroviral read	% Genome coverage	Internal gap length (bp)	Mean coverage	Accession numbers	Pairwise identity (%)
CV-A6	1	RS	22.69	90.2	99.5	0	26542	KX430795	100
				85.1	100	0	22630	KX430796
	2	TS	28.34	11.2	97.5	0	1173	KX430797	100
				10.9	95.3	0	1119	KX430798
	3	RS	30.5	7.9	97.7	0	1822	KX430799	100
				8.3	97.3	57	2244	KX430800
	4	TS	32.06	7.1	75	1625	1328	KX430801	99.96
				13.3	96.8	41	3061	KX430802
CV-A10	5	RS	20.92	40.7	99.2	0	11189	KX430803	100
				53.8	98	0	12725	KX430804
	6	RS	23.59	53.1	97.5	0	17439	KX430805	100
				51.9	97.6	0	14086	KX430806
	7	RS	26.71	18.2	98	0	4299	KX430807	99.99
				14.5	97	0	3820	KX430808
	8	TS	33.2	42.4	94	0	12216	KX430809	99.99
				30.5	97.2	26	8412	KX430810
CV-A16	9	TS	24.97	83.8	99.7	0	3161	KX430811	100
				80.1	99	0	20597	KX430812
	10	TS	26.72	2	91	71	475	KX430813	100
				2.1	96	0	509	KX430814
	11	TS	33.26	4.5	96	0	971	KX430815	100
				4.2	86	712	1101	KX430816
EV-A71	12	TS	31.1	0.2	72.5	1447	5.3	KX430817	100
				0.3	94	0	52.6	KX430818

^aMiseq run was multiplexed. Only run output of relevant samples were shown here; CV-A6: coxsackievirus A6, CV-A10: coxsackievirus A10, CV-A16: coxsackievirus A16 and EV-A71 B5: enterovirus A71 subgenogroup B5; TS: Throat swab; RS: rectal swab