Table 2. 32 noticeable occurrence frequency breakpoint regions (NOF-BPRs), which was found in at least 10% of all samples in the single tumor entities and/or the healthy tissues.
chr | SNP A | SNP B | breast | color. | gastr. | lung | medul. | ov. | pro. | renal | normal | class |
---|---|---|---|---|---|---|---|---|---|---|---|---|
2 | 172,338,300 | 172,339,964 | 7.96 | 14.29 | 0.29 | 1.72 | 2.26 | 8.21 | 0.00 | 7.34 | 0.69 | 3 |
172,345,151 | 172,348,021 | 4.51 | 14.29 | 0.00 | 1.37 | 1.63 | 7.73 | 0.00 | 7.34 | 0.69 | 3 | |
4 | 3,027,493 | 3,027,897 | 0.00 | 0.00 | 11.47 | 0.00 | 0.00 | 0.00 | 0.00 | 1.83 | 1.39 | 3 |
3,029,623 | 3,035,631 | 0.00 | 0.00 | 11.76 | 0.00 | 0.00 | 0.00 | 0.00 | 1.83 | 1.16 | 3 | |
9,994,215 | 9,996,852 | 12.47 | 0.00 | 1.47 | 1.37 | 0.00 | 0.00 | 0.00 | 3.67 | 0.00 | 2 | |
9,997,801 | 10,001,833 | 13.79 | 0.00 | 7.35 | 3.44 | 0.00 | 0.00 | 0.00 | 3.67 | 0.00 | 2 | |
5 | 4,430,296 | 4,431,868 | 0.27 | 0.00 | 11.18 | 0.69 | 0.00 | 0.00 | 0.00 | 0.00 | 1.16 | 1 |
4,443,854 | 4,445,976 | 0.27 | 0.00 | 18.53 | 2.06 | 0.00 | 0.00 | 0.00 | 0.00 | 0.93 | 3 | |
61,569,169 | 61,572,989 | 0.00 | 0.00 | 0.00 | 0.34 | 1.09 | 0.00 | 0.00 | 12.84 | 0.46 | 2 | |
126,152,745 | 126,158,200 | 0.27 | 0.00 | 0.00 | 1.37 | 1.54 | 0.00 | 0.00 | 10.09 | 1.16 | 3 | |
6 | 67,048,629 | 67,049,406 | 2.39 | 12.70 | 2.65 | 2.75 | 1.18 | 0.48 | 0.00 | 4.59 | 0.46 | 2 |
77,422,497 | 77,439,868 | 7.16 | 10.05 | 2.35 | 5.15 | 6.07 | 4.83 | 1.67 | 5.50 | 3.24 | 3 | |
7 | 35,396,655 | 35,397,567 | 0.00 | 0.00 | 1.03 | 3.82 | 0.27 | 11.59 | 5.83 | 0.00 | 8.33 | 3 |
8 | 6,104,977 | 6,107,427 | 1.59 | 15.87 | 1.18 | 1.03 | 1.36 | 5.31 | 0.00 | 8.26 | 0.23 | 2 |
39,225,941 | 39,288,762 | 7.69 | 12.17 | 4.71 | 8.25 | 8.79 | 4.35 | 0.83 | 9.17 | 5.56 | 3 | |
39,397,732 | 39,398,022 | 7.43 | 11.11 | 4.71 | 8.25 | 8.79 | 4.83 | 0.83 | 9.17 | 5.09 | 3 | |
43,778,914 | 46,924,211 | 9.02 | 3.70 | 2.65 | 7.22 | 0.63 | 8.21 | 14.17 | 5.50 | 3.01 | 3 | |
9 | 9,337,599 | 9,338,146 | 0.27 | 0.53 | 13.53 | 0.34 | 0.00 | 0.00 | 0.00 | 0.00 | 0.46 | 1 |
9,338,417 | 9,339,871 | 0.27 | 0.53 | 11.76 | 0.69 | 0.00 | 0.00 | 0.00 | 0.00 | 0.46 | 1 | |
10 | 44,051,819 | 44,065,519 | 0.53 | 0.00 | 0.00 | 1.03 | 0.36 | 0.00 | 0.00 | 10.09 | 0.23 | 2 |
11 | 9,241,448 | 9,250,359 | 1.06 | 1.06 | 0.29 | 1.72 | 2.90 | 0.97 | 0.00 | 11.01 | 0.93 | 3 |
14 | 35,070,371 | 35,076,347 | 0.00 | 0.00 | 0.00 | 0.34 | 0.45 | 0.00 | 0.00 | 10.09 | 0.46 | 1 |
16 | 70,842,097 | 70,854,381 | 15.38 | 0.00 | 0.29 | 1.03 | 1.81 | 0.48 | 0.00 | 0.00 | 0.23 | 2 |
85,082,710 | 85,091,864 | 0.27 | 4.76 | 0.29 | 0.34 | 15.58 | 1.45 | 0.00 | 10.09 | 0.23 | 2 | |
85,091,864 | 85,092,483 | 11.14 | 22.75 | 9.41 | 26.12 | 27.90 | 21.26 | 0.00 | 11.01 | 4.86 | 3 | |
85,092,748 | 85,092,892 | 9.81 | 27.51 | 9.71 | 25.43 | 43.48 | 22.71 | 0.00 | 21.10 | 5.09 | 3 | |
17 | 18,917,513 | 18,917,915 | 1.86 | 1.59 | 0.29 | 0.69 | 10.05 | 0.00 | 0.00 | 0.00 | 0.00 | 2 |
18,917,915 | 19,168,912 | 0.53 | 0.53 | 0.00 | 0.00 | 15.40 | 0.00 | 0.00 | 0.00 | 0.00 | 1 | |
18 | 4,976,160 | 4,979,612 | 0.27 | 16.40 | 4.12 | 0.00 | 1.36 | 0.00 | 0.00 | 25.69 | 11.81 | 3 |
4,989,683 | 4,990,804 | 0.27 | 11.64 | 2.35 | 0.00 | 2.08 | 0.00 | 2.50 | 20.18 | 11.34 | 3 | |
21 | 23,655,764 | 23,655,900 | 0.00 | 0.53 | 10.00 | 12.03 | 0.63 | 5.31 | 3.33 | 0.00 | 6.71 | 3 |
23,664,658 | 23,667,121 | 0.53 | 2.65 | 11.47 | 13.40 | 3.62 | 11.59 | 7.50 | 0.92 | 9.03 | 3 |
BPRs are provided with their related chromosome (chr), start (SNP A) and end (SNP B) positions, absolute occurrence probability in the tumor entities (breast, color., gastr., lung, medul., ov., pro., renal), and the total occurrence over all tumor samples (cancer) and in healthy tissue samples (normal), respectively, and the related classification of the BPRs (tumor entity-specific (1)—occurrence is ≥ 1% in exclusively one tumor entity with or without being found in healthy samples, cancer-specific (2)—occurrence is ≥ 1% in more than 25% of the entities and in normal samples < 0.5%, common (3)—occurrence is ≥ 1% in ≥ 25% of the entities and ≥ 0.5% in normal samples.
Abbreviations: color.—colorectal; gastr.—gastric; medul.—pediatric medulloblastoma; ov.—ovarian; pro.—prostate; ren.—renal