Table 2. DSX targets with consistent DSX regulation across strains.

Gene	Chr.	Sex Bias	Regulatory Mode	DSX Occupancya	DSX Occupancyb
CG8539	3L	Female	Activator	0	0
Cpr72Ea	3L	Female	Female specific activator	0	0
Mp20	2R	Female	Female specific activator	0	1
CG31522	3R	Female	Female specific activator	1	0
trpl	2R	Female	Male specific repressor	0	0
CG3759	2L	Female	Male specific repressor	1	0
Yp2	X	Female	Male specific repressor	1	1
Fmo-2	2R	Female	Male specific repressor	1	1
Yp3	X	Female	Opposing effects	0	1
Yp1	X	Female	Opposing effects	1	1
rost	2L	Female	Opposing effects/	1	1
			Male specific repressor
CG15012	3L	Male	Female specific repressor	0	0
mav	4	Male	Female specific repressor	0	0
CG12158	2R	Male	Female specific repressor	0	0
Cyp4d21	2L	Male	Female specific repressor	0	0
CG31145	3R	Male	Female specific repressor	1	0
CG18547	3R	Male	Female specific repressor	1	0
Cyp313a1	3R	Male	Opposing effects	0	0

Genes with patterns of sex-differential expression in wild-type, dsx^D pseudo male, and dsx null comparisons, and the same regulatory mode in both Canton S and Berlin strains (FDR < 0.10). Sex bias, the direction of sex-differential expression: Female (Female-biased) or Male (Male-biased); Regulatory mode, the seven types of DSX regulation; DSX occupancy.

^aDSX^M and DSX^F ChIP-seq in S2 cells and DSX^M and DSX^F Dam-ID in female ovaries, and male and female fat body (Clough et al. 2014; Table S1).

^bDSX^F Dam-ID in adult females (Luo et al. 2011; Table S1). Bold indicates validated DSX targets.