Table 3. Summary of Illumina sequencing.
Tissue | Sample Name | Raw Reads | Clean Reads | Clean Bases (bp) | Valid Ratio (%) | Q30 (%) | GC Content (%) | Total Mapped Reads |
---|---|---|---|---|---|---|---|---|
Liver | A14G | 54272912 | 53984128 | 6743324339 | 99.39 | 92.50 | 49.0 | 37007492 |
Liver | A17G | 54897634 | 54612062 | 6821811425 | 99.41 | 92.62 | 49.0 | 37514969 |
Liver | A24G | 58981376 | 58670858 | 7328755933 | 99.40 | 92.40 | 49.0 | 41828564 |
Liver | B6G | 43045126 | 42823256 | 5349250748 | 99.41 | 92.62 | 49.0 | 29871220 |
Liver | B14G | 56363624 | 56062464 | 7003011885 | 99.39 | 92.55 | 48.5 | 38557847 |
Liver | B15G | 44367286 | 44136162 | 5513068527 | 99.40 | 92.27 | 48.0 | 30338161 |
Muscle | A14M | 51679634 | 51416892 | 6421765893 | 99.40 | 91.69 | 49.0 | 25474058 |
Muscle | A17M | 46154200 | 45912278 | 5735008428 | 99.40 | 92.32 | 49.0 | 23944779 |
Muscle | A24M | 54084880 | 53808252 | 6721243425 | 99.41 | 92.30 | 50.0 | 28855995 |
Muscle | B6M | 46911708 | 46665656 | 5829074439 | 99.40 | 92.34 | 49.0 | 23568399 |
Muscle | B14M | 49465288 | 49209082 | 6146719244 | 99.41 | 92.28 | 49.0 | 25481567 |
Muscle | B15M | 46522126 | 46280970 | 5781030700 | 99.41 | 92.29 | 49.0 | 24009210 |
A, White Carneau; B, Europigeon.