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Prevalence of MMAP reads and methods. (A) MMAP rates for reads from mRNA-seq and sRNA-seq data from A. thaliana (At), O. sativa (Os), and Z. mays (Zm). Horizontal bars mark median values, circles mark values for individual libraries. (B) Proportion of MMAP-selection methods for sRNA alignment in recent literature (n = 20; Table S4).
