Table 1.
Overview of CASP11 Targets
| Domain | Class | Temp | Level | Architecture | H/XGroup:Name |
|---|---|---|---|---|---|
| T0759-D1 | TBM | 1lm5B | Family | a+b duplicates or obligate multimers | H:beta-hairpin-alpha-hairpin repeat |
| T0759-D2 | TBM | 1lm5B | Family | a+b duplicates or obligate multimers | H:beta-hairpin-alpha-hairpin repeat |
| T0760-D1* | TBM | 3k0yA | Family Family |
beta barrels beta sandwiches |
H:OB domain in putative lipoprotein BF3042-related proteins H:Ig-like domain in putative lipoprotein BF3042-related proteins |
| T0761-D1 | FM | 3kiiB | X-group | a+b two layers | X:Cystatin-like |
| T0761-D2 | FM | 3kztA | X-group | a+b two layers | X:Cystatin-like |
| T0762-D1 | TBM | 4ib2A | Family | a/b three-layered sandwiches | H:Periplasmic binding protein-like II |
| T0763-D1 | FM | 2mctA | X-group | a+b two layers | X:Uncharacterized protein ZP 02042476.1 |
| T0764-D1 | TBM | 1qlwA | Family | a/b three-layered sandwiches | H:alpha/beta-Hydrolases |
| T0765-D1 | TBM | 2dt9A | X-group | a+b two layers | X:Alpha-beta plaits |
| T0766-D1 | TBM | 4orlA | Family | a+b two layers | H:NTF2-like |
| T0767-D1 | TBM | 4gl6A | H-group | a+b two layers | H:hypothetical protein (RUMGNA 01148) |
| T0767-D2 | FM | 4gl6A | H-group | combined into above | |
| T0768-D1 | TBM | 4gt6A | Family | beta duplicates or obligate multimers | H:Leucine-rich repeats |
| T0769-D1 | TBM | 2y4eB | X-group | a+b two layers | X:Alpha-beta plaits |
| T0770-D1 | TBM | 3p1uB | H-group | alpha superhelices | H:ARM repeat |
| T0771-D1 | FM | 1xx3A | X-group | a+b two layers | X:TolA/TonB C-terminal domain |
| T0772-D1 | TBM | 3hbkA | Family | beta sandwiches | H:Concanavalin A-like |
| T0773-D1 | TBM | 3opkA | X-group | a+b two layers | X:Alpha-beta plaits |
| T0774-D1* | TBM | 4k4kB | Family Family |
beta sandwiches beta sandwiches |
H:Immunoglobulin-related H:Immunoglobulin-related |
| T0775-D1 | FM | 2yvvA | H-group | beta duplicates or obligate multimers | H:Phage tail fiber protein trimerization domain |
| T0775-D2 | FM | 1qa2A | H-group | beta duplicates or obligate multimers | H:Phage tail fiber protein trimerization domain |
| T0775-D3 | FM | 3vtoP | H-group | beta duplicates or obligate multimers | H:Phage tail fiber protein trimerization domain |
| T0775-D4 | FM | 2xc1C | H-group | beta duplicates or obligate multimers | H:Phage tail fiber protein trimerization domain |
| T0775-D5 | FM | 4a0tA | H-group | beta duplicates or obligate multimers | H:Phage tail fiber protein trimerization domain |
| T0775-D6 | FM | 2xc1B | H-group | beta duplicates or obligate multimers | H:Phage tail fiber protein trimerization domain |
| T0776-D1 | TBM | 4jj4B | Family | a/b three-layered sandwiches | H:SGNH hydrolase |
| T0777-D1 | FM | 1fftF | New | alpha complex topology | new to ecod |
| T0780-D1 | TBM | 2kq1A | Family | a+b complex topology | H:Insert subdomain of RNA polymerase alpha subunit |
| T0780-D2 | TBM | 2kxyA | Family | a+b complex topology | H:Insert subdomain of RNA polymerase alpha subunit |
| T0781-D1 | FM | 3gwrB | H-group | a+b two layers | H:NTF2-like |
| T0781-D2 | TBM | 3gwrB | H-group | a+b two layers | H:NTF2-like |
| T0782-D1 | TBM | 3ebkA | X-group | beta barrels | X:Lipocalins/Streptavidin |
| T0783-D1 | TBM | 1vpaA | Family | a/b three-layered sandwiches | H:Nucleotide-diphospho-sugar transferases |
| T0783-D2 | TBM | 2ptgA | X-group | a/b three-layered sandwiches | X:Rossmann-like |
| T0784-D1 | TBM | 3u6gA | Family | beta sandwiches | H:DUF4425 |
| T0785-D1 | FM | 1zruA | H-group | beta sandwiches | H:Domain in virus attachment proteins |
| T0786-D1* | TBM | 2q4hA | H-group H-group |
a+b three layers a+b three layers |
H:HIT-like H:HIT-like |
| T0789-D1 | FM | 3sb1A | X-group | a+b two layers | X:hydrogenase expression protein-like |
| T0789-D2 | FM | 3sb1A | X-group | combined into above | |
| T0790-D1 | FM | 3sb1A | X-group | a+b two layers | X:hydrogenase expression protein-like |
| T0790-D2 | FM | 3sb1A | X-group | combined into above | |
| T0791-D1 | FM | 3sb1B | X-group | a+b two layers | X:hydrogenase expression protein-like |
| T0791-D2 | FM | 3sb1B | X-group | combined into above | |
| T0792-D1 | TBM | 2lh9A | Family | alpha arrays | H:HTH |
| T0793-D1 | FM | 1g6zA | X-group | beta barrels | X:SH3 |
| T0793-D2 | FM | 2ozxA | New | few SS elements | new to ecod |
| T0793-D3 | TBM | 4fdgC | H-group | a/b three-layered sandwiches | H:P-loop domains-related |
| T0793-D4 | TBM | 4fdgC | H-group | combined into above | |
| T0793-D5 | FM | 1v3fA | H-group | alpha arrays | H:HTH |
| T0794-D1 | TBM | 1j31C | Family | a+b four layers | H:Carbon-nitrogen hydrolase |
| T0794-D2 | FM | 2wmfA | X-group | beta sandwiches | X:Glycosyl hydrolase domain-like |
| T0795-D1 | TBM | 3zpfA | H-group | beta sandwiches | H:Domain in virus attachment proteins |
| T0796-D1 | TBM | 2d42A | Family | beta complex topology | H:Aerolisin/ETX pore-forming domain-related |
| T0799-D1 | FM | 2xc1B | H-group | beta duplicates or obligate multimers | H:Phage tail fiber protein trimerization domain |
| T0799-D2 | FM | 1v0eA | H-group | beta duplicates or obligate multimers | H:Phage tail fiber protein trimerization domain |
| T0799-D3 | TBM | 2xc1B | H-group | beta duplicates or obligate multimers | H:Phage tail fiber protein trimerization domain |
| T0799-D4 | TBM | 3gw6D | H-group | alpha arrays | H:Intramolecular chaperone domain in virus tail spike protein |
| T0800-D1 | TBM | 3lycL | H-group | beta duplicates or obligate multimers | H:Pectin lyase-like |
| T0801-D1 | TBM | 3dr4C | Family | a/b three-layered sandwiches | H:PLP-dependent transferases |
| T0802-D1 | FM | 2wstC | H-group | beta sandwiches | H:Domain in virus attachment proteins |
| T0803-D1 | TBM | 1t92A | H-group | a+b two layers | H:Pili subunits |
| T0804-D1 | FM | 4gu3C | H-group | beta duplicates or obligate multimers | H:Triple beta-spiral |
| T0804-D2 | FM | 2j1kF | H-group | beta sandwiches | H:Domain in virus attachment proteins |
| T0805-D1 | TBM | 2iskB | Family | a+b two layers | H:FMN-dependent nitroreductase-like |
| T0806-D1 | FM | 2q07A | X-group | a/b three-layered sandwiches | X:Other Rossmann-like structures with the crossover |
| T0807-D1 | TBM | 3lutA | Family | a/b barrels | H:TIM barrels |
| T0808-D1 | TBM | 3zm8A | H-group | beta sandwiches | H:Concanavalin A-like |
| T0808-D2 | FM | 4hfsB | H-group | beta sandwiches | H:Concanavalin A-like |
| T0810-D1 | FM | 4c0eA | H-group | alpha superhelices | H:ARM repeat |
| T0810-D2 | TBM | 2c1gA | Family | a/b barrels | H:Glycoside hydrolase/deacetylase |
| T0811-D1 | TBM | 1b9bA | Family | a/b barrels | H:TIM barrels |
| T0812-D1 | TBM | 1v0aA | H-group | beta sandwiches | H:Concanavalin A-like |
| T0813-D1* | TBM | 3gggC | Family Family |
a/b three-layered sandwiches alpha arrays |
H:Rossmann-related H:6-phosphogluconate dehydrogenase C-terminal domain-like |
| T0814-D1 | FM | 3ac0A | H-group | beta sandwiches | H:Immunoglobulin-related |
| T0814-D2 | FM | 2je8B | H-group | beta sandwiches | H:Immunoglobulin-related |
| T0814-D3 | TBM | 1eo5A | H-group | beta sandwiches | H:Immunoglobulin-related |
| T0815-D1 | TBM | 3gzrB | Family | a+b two layers | H:NTF2-like |
| T0816-D1 | TBM | 1bqbA | X-group | a/b three-layered sandwiches | X:Zincin-like |
| T0817-D1* | TBM | 4dcxB | Family Family |
a/b three-layered sandwiches a+b two layers |
H:Periplasmic binding protein-like II H:Oligo-peptide binding protein (OPPA) insertion domain |
| T0817-D2 | TBM | 2nooA | Family | a/b three-layered sandwiches | H:Periplasmic binding protein-like II |
| T0818-D1 | TBM | 2mc8A | H-group | a+b two layers | H:NTF2-like |
| T0819-D1 | TBM | 3getA | Family | a+b two layers | H:C-terminal domain in some PLP-dependent transferases |
| T0820-D1 | FM | 2q1hA | New | alpha obligate multimers | new to ecod |
| T0820-D2 | TBM | 2f23B | X-group | a+b duplicates or obligate multimers | X:FKBP-like |
| T0821-D1 | TBM | 1w3bA | Family | alpha superhelices | H:ARM repeat |
| T0822-D1 | TBM | 2zxqA | H-group | beta sandwiches | H:Concanavalin A-like |
| T0823-D1 | TBM | 1lqaB | H-group | a/b barrels | H:TIM barrels |
| T0824-D1 | FM | 1g8tB | H-group | few SS elements | H:His-Me finger endonucleases |
| T0826-D1 | FM | 4od4A | New | alpha bundles | new to ecod |
| T0826-D2 | TBM | 4kayB | Family | a/b three-layered sandwiches | H:Alkaline phosphatase-like |
| T0827-D1 | TBM | 4k92A | H-group | alpha superhelices | H:ARM repeat |
| T0827-D2 | FM | 1iqrA | New | alpha complex topology | new to ecod |
| T0828-D1 | TBM | 1wk0A | H-group | beta sandwiches | H:Immunoglobulin-related |
| T0828-D2 | TBM | 3vtyC | H-group | alpha superhelices | H:ARM repeat |
| T0829-D1 | TBM | 3k8rA | X-group | a+b two layers | X:NE0471 N-terminal domain-like |
| T0830-D1 | TBM | 3wakA | Family | alpha bundles | H:STT3/PglB/AglB transmembrane domain |
| T0830-D2 | TBM | 3wakA | H-group | a/b three-layered sandwiches | H:STT3/PglB/AglB core domain |
| T0831-D1 | TBM | 3qkyA | X-group | alpha superhelices | X:Repetitive alpha hairpins |
| T0831-D2 | FM | 3zcjD | X-group | alpha bundles | X:Spectrin repeat-like |
| T0832-D1 | FM | 1dmwA | H-group | a+b complex topology | H:Aromatic aminoacid monoxygenases, catalytic and oligomeric |
| T0833-D1 | TBM | 3mswA | Family | beta meanders | H:Uncharacterized protein BF3112 |
| T0834-D1 | FM | 2grgA | X-group | a+b three layers | X:Profilin-like |
| T0834-D2 | FM | 4gyoB | X-group | alpha bundles | X:Repetitive alpha hairpins |
| T0835-D1 | TBM | 3wkfA | Family | alpha superhelices | H:alpha/alpha toroid |
| T0836-D1 | FM | 2fynM | H-group | alpha bundles | H:Transmembrane heme-binding four-helical bundle |
| T0837-D1 | FM | 2af7D | X-group | alpha arrays | X:AhpD-like |
| T0838-D1 | TBM | 2lnjA | H-group | a+b three layers | H:Mog1p/PsbP-like |
| T0839-D1* | TBM | 1hf8A | Family Family |
alpha bundles alpha superhelices |
H:GAT-like domain H:ARM repeat |
| T0843-D1* | TBM | 2ogeD | Family Family |
a/b three-layered sandwiches a+b two layers |
H:PLP-dependent transferases H:C-terminal domain in some PLP-dependent transferases |
| T0845-D1 | TBM | 2cqvA | H-group | beta sandwiches | H:Immunoglobulin-related |
| T0845-D2 | TBM | 3dsmA | H-group | beta duplicates or obligate multimers | H:beta-propeller |
| T0847-D1 | TBM | 1bysA | H-group | a/b three-layered sandwiches | H:Phospholipase D/nuclease |
| T0848-D1 | TBM | 3cfuA | Family | beta sandwiches | H:Antigen MPT63/MPB63 (immunoprotective extracellular protein) |
| T0848-D2 | TBM | 3d9rD | H-group | a+b two layers | H:NTF2-like |
| T0849-D1* | TBM | 1tu8A | Family Family |
alpha superhelices mixed a+b and a/b |
H:Glutathione S-transferase (GST)-C H:Thioredoxin-like |
| T0851-D1* | TBM | 3gg2D | Family Family |
a/b three-layered sandwiches alpha arrays |
H:Rossmann-related H:6-phosphogluconate dehydrogenase C-terminal domain-like |
| T0852-D1 | TBM | 3gffA | Family | a/b three-layered sandwiches | H:alpha/beta-Hydrolases |
| T0852-D2 | TBM | 2oevA | H-group | alpha superhelices | H:ARM repeat |
| T0853-D1 | TBM | 1yn4A | X-group | a+b two layers | X:beta-Grasp |
| T0853-D2 | TBM | 1yn4A | X-group | a+b two layers | X:beta-Grasp |
| T0854-D1 | TBM | 2hszA | Family | a/b three-layered sandwiches | H:HAD domain-related |
| T0854-D2 | TBM | 2ah5A | Family | a/b three-layered sandwiches | H:HAD domain-related |
| T0855-D1 | FM | 1ikjA | New | a+b two layers | new to ecod |
| T0856-D1 | TBM | 3tojB | Family | beta sandwiches | H:Concanavalin A-like |
| T0857-D1 | TBM | 3lxuX | H-group | beta sandwiches | H:Immunoglobulin-related |
| T0858-D1* | TBM | 2v3eA | Family | a/b barrels | H:TIM barrels |