. Author manuscript; available in PMC: 2016 Sep 22.

Published in final edited form as: Mol Psychiatry. 2016 Jan 12;21(10):1391–1399. doi: 10.1038/mp.2015.197

Table 4.

Top associated genes (Q < 0.1) using gene-based tests

Gene	p-value^a	q-value	SNP^b with lowest P	Lowest P^c	Chr	Gene Feature
*Case-Control*
LOC152225	1.19E-06	0.028	rs1709393	1.65E-08	3	ncRNA
*Factor Score*
PREPL	5.61E-08	0.001	rs786618	6.99E-09	2	intronic
CAMKMT	3.15E-07	0.004	rs1067327	2.86E-09	2	intronic
SLC3A1	1.45E-06	0.012	rs1142523	1.44E-07	2	3’UTR
LBX1	7.50E-06	0.045	rs11190870	9.79E-07	10	downstream
LBX1-AS1	1.33E-05	0.064	rs594791	1.05E-06	10	upstream

We used LD pruning at r² of 0.4 for gene-based tests. Boldface indicates genome-wide P < 2×10⁻⁶.

Gene-based p-value (bolded genome-wide significant P<2×10⁻⁶) .

Most significant SNP within the corresponding gene.

SNP-based p-value for the most significant SNP