Table 1.
Data class > Category | Attributes |
Data objects or attributes |
|
---|---|---|---|
human | mouse | ||
TSS region > FFCP | human readable description | 201 802 | 158 966 |
association with genesa | 174 802 | 136 492 | |
co-expression modulea | 240 776 | 180 000 | |
CAGE expressiona | 201 802 | 158 966 | |
ontology-based sample term enrichment analysisa | 6 097 409 | 2 843 664 | |
Gene > EntrezGene | human readable description | 408 504 | 317 946 |
DNA-binding motifs (only for transcription factors) | 91 | 88 | |
association with TSS regions (CAGE peaks)+ | 174 802 | 136 492 | |
Co-expression module> Coexpression_cluster, MCL_coexpression_mm9 | TSS region (CAGE peak) cluster+ | 310 | 278 |
pathway enrichment | 1672 | 1385 | |
gene ontology enrichment | 48 473 | 38 751 | |
ENCODE TF ChIP-seq peak enrichment analysis (with Coexpression) | 29 778 | N/A | |
sample ontology enrichmenta | 224 852 | 87 181 | |
relative expression of the co-expression clustera | 889 | 389 | |
Sample > FF Sample | human readable description | 1816 | 1 018 |
classification according to the sample ontology (‘Ancestor terms’)a | 34 689 | 12 357 | |
transcription factors with enriched expression | 983 000 | 367 000 | |
co-expression clusters with enriched expression | 300 798 | 81 474 | |
repeat families with enriched expression | 130 789 | 34 865 | |
overrepresented JASPAR motifs | 112 | 112 | |
overrepresented novel unique motifs | 169 | 168 | |
Homer de novo motifs | 39 320 | 14 680 | |
Sample ontology > FF ontology | description | 3782 | |
parent terms | 9640 | ||
children terms | 9620 | ||
Motifs > JASPER_motif, Novel_motif | human readable description | 687 | |
association to promoter expressiona | 1278 |
SSTAR data objects and their corresponding categories in MediaWiki and the attributes in each object. Relationship to other objects are indicated with a (*:forward and +reverse).