. 2016 Jul 9;2016:baw105. doi: 10.1093/database/baw105

Table 1.

Summary of the number of objects in SSTAR

Data class > Category	Attributes	Data objects or attributes
		human	mouse
*TSS region > FFCP*	human readable description	201 802	158 966
	association with genes^a	174 802	136 492
	co-expression module^a	240 776	180 000
	CAGE expression^a	201 802	158 966
	ontology-based sample term enrichment analysis^a	6 097 409	2 843 664
*Gene > EntrezGene*	human readable description	408 504	317 946
	DNA-binding motifs (only for transcription factors)	91	88
	association with TSS regions (CAGE peaks)+	174 802	136 492
*Co-expression module> Coexpression_cluster, MCL_coexpression_mm9*	TSS region (CAGE peak) cluster+	310	278
	pathway enrichment	1672	1385
	gene ontology enrichment	48 473	38 751
	ENCODE TF ChIP-seq peak enrichment analysis (with Coexpression)	29 778	N/A
	sample ontology enrichment^a	224 852	87 181
	relative expression of the co-expression cluster^a	889	389
*Sample > FF Sample*	human readable description	1816	1 018
	classification according to the sample ontology (‘Ancestor terms’)^a	34 689	12 357
	transcription factors with enriched expression	983 000	367 000
	co-expression clusters with enriched expression	300 798	81 474
	repeat families with enriched expression	130 789	34 865
	overrepresented JASPAR motifs	112	112
	overrepresented novel unique motifs	169	168
	Homer de novo motifs	39 320	14 680
*Sample ontology > FF ontology*	description	3782
	parent terms	9640
	children terms	9620
*Motifs > JASPER_motif, Novel_motif*	human readable description	687
*Motifs > JASPER_motif, Novel_motif*	association to promoter expression^a	1278

SSTAR data objects and their corresponding categories in MediaWiki and the attributes in each object. Relationship to other objects are indicated with ^a (*:forward and +reverse).