Table 3.
Nucleotide and gene count levels of the genome of P. putida SQ1
| Attribute | Genome (total) | |
|---|---|---|
| Value | % of totala | |
| Genome size (bp) | 5,328,888 | 100.00 |
| DNA coding | 4,750,611 | 89.15 |
| DNA G + C (bp) | 3,281,384 | 61.58 |
| DNA scaffolds | 1,634 | 100.00 |
| Total genes | 5,925 | 100.00 |
| Protein coding genes | 5,824 | 98.30 |
| RNA genes | 101 | 1.70 |
| rRNA operon count | 9 | 0.15 |
| Genes with function prediction | 4,624 | 78.04 |
| Genes in paralog clusters | 4,497 | 75.90 |
| Genes assigned to COGs | 3,249 | 54.84 |
| Genes with Pfam domains | 4,781 | 80.69 |
| Genes with signal peptides | 535 | 9.03 |
| Genes with transmembrane helices | 1,270 | 21.43 |
| CRISPR count | 1 | |
a) The total is based on either the size of the genome in base pairs or the total number of protein coding genes predicted in the annotated draft genome