Table 4.
Number of genes associated with general COG functional categories in P. putida SQ1
| Code | Value | % agea | Description |
|---|---|---|---|
| J | 167 | 4.60 | Translation, ribosomal structure and biogenesis |
| A | 1 | 0.03 | RNA processing and modification |
| K | 323 | 8.90 | Transcription |
| L | 107 | 2.95 | Replication, recombinant and repair |
| B | 1 | 0.03 | Chromatin structure and dynamics |
| D | 28 | 0.77 | Cell cycle control, Cell division, chromosome partitioning |
| V | 40 | 1.10 | Defense mechanisms |
| T | 204 | 5.62 | Signal transduction mechanisms |
| M | 179 | 4.93 | Cell wall/membrane/envelope biogenesis |
| N | 99 | 2.73 | Cell motility |
| U | 107 | 2.95 | Intracellular trafficking, secretion, and vesicular transport |
| O | 143 | 3.94 | Posttranslational modification, protein turnover, chaperones |
| C | 221 | 6.09 | Energy production and conversion |
| G | 183 | 5.04 | Carbohydrate transport and metabolism |
| E | 369 | 10.17 | Amino acid transport and metabolism |
| F | 87 | 2.40 | Nucleotide transport and metabolism |
| H | 158 | 4.35 | Coenzyme transport and metabolism |
| I | 147 | 4.05 | Lipid transport and metabolism |
| P | 216 | 5.95 | Inorganic ion transport and metabolism |
| Q | 91 | 2.51 | Secondary metabolites biosynthesis, transport and catabolism |
| R | 423 | 11.66 | General function prediction only |
| S | 335 | 9.23 | Function unknown |
| - | 2,676 | 45.16 | Not in COGs |
a) The total is based on the total number of protein coding genes in the annotated genome