Table 1.
Strains or plasmids | Relevant characteristicsa | Reference or sourceb |
---|---|---|
Strains | ||
C. acetobutylicum ATCC 824 | Wild type | ATCC |
E.coli ER2275 | hsdR mcr recA1 endA1 | NEB |
E.coli DH5α | General cloning host strain | Takara |
Plasmids | ||
pAN1 | Φ3TI, p15a origin, Sper | Mermelstein and Papoutsakis (1993) |
pMTL82254 | Clostridium modular plasmid with catP reporter, pBP1 (Gram+ origin), ColE1+tra (Gram– origin), Emr | Heap et al. (2009) |
pMTL82254-Pfdx | Clostridium modular plasmid with catP reporter expressed by the fdx promoter, pBP1 (Gram+ origin), ColE1+tra (Gram– origin), Emr | Zhang, Grosse-Honebrink and Minton (2015) |
pMTL82254-Pcac1339 | Clostridium modular plasmid with catP reporter expressed by promoter of cac1339, pBP1 (Gram+ origin), ColE1+tra (Gram– origin), Emr | This study |
pMTL82254-Pcac1344 | Clostridium modular plasmid with catP reporter expressed by promoter of cac1344, pBP1 (Gram+ origin), ColE1+tra (Gram– origin), Emr | This study |
pMTL82254-Pcac2612 | Clostridium modular plasmid with catP reporter expressed by promoter of cac2612, pBP1 (Gram+ origin), ColE1+tra (Gram– origin), Emr | This study |
pMTL83151 | Clostridium modular plasmid used for construction of IPTG inducible promoter system, pCB102 (Gram+ origin), ColE1+tra (Gram– origin), Tmr | Heap et al. (2009) |
pMTL-SC0 | Transposon plasmid with pBP1 replicon, Tmr | Cartman and Minton (2010) |
pMTL-YG0 | Derived from pMTL-SC0 by replacing pBP1 with pCB102 replicon | This study |
pMTL-YG3 | Derived from pMTL-YG0 by introducing the promoter of cac1339 to express the transposase Himar1 C9 | This study |
a hsdR, host-specific restriction deficient; mcr, methylcytosine-specific restriction abolished; recA1, homologous recombination abolished; endA1, endonucleases abolished; Sper, spectinomycin resistance; Emr, erythromycin resistance; Tmr: thiamphenicol resistance; pBP1, Gram-positive origin of replication; pCB102, Gram-positive origin of replication, which was unstable in C. acetobutylicum
bATCC, American Type Culture Collection; NEB, New England Biolabs.