Table 2. Total sequences read before and after sequence trimming, number of bacterial classes and genera and diversity indices for each sample and subsample of PorBBD (DT1a-DT1b and DT2a-DT2b), apparently healthy tissue (HT1a-HT1b and HT2a-HT2b) and control tissue (CTa and CTb).
| DT1a | DT1b | DT2a | DT2b | HT1a | HT1b | HT2a | HT2b | CTa | CTb | |
|---|---|---|---|---|---|---|---|---|---|---|
| Σ raw sequences | 11,320 | 12,703 | 14,848 | 13,386 | 15,660 | 14,646 | 19,008 | 15,221 | 12,563 | 8,746 |
| Σ OTU | 2,560 | 2,569 | 2,338 | 2,363 | 1,417 | 1,334 | 1,484 | 1,149 | 1,160 | 801 |
| Σ bacterial Phylum | 14 | 8 | 12 | 10 | 6 | 8 | 13 | 12 | 14 | 11 |
| Σ genera | 118 | 48 | 63 | 69 | 15 | 19 | 29 | 22 | 29 | 32 |
| Shannon index | 4.689 | 4.586 | 4.477 | 4.509 | 3.333 | 3.398 | 3.204 | 3.191 | 3.563 | 3.666 |
| Simpson reciprocal index | 13.642 | 13.334 | 13.458 | 13.650 | 9.090 | 9.294 | 8.336 | 8.326 | 9.949 | 10.215 |