Table 1. Distribution of coding SNPs selected from resequencing data.

Chr.	Length (Mb)	No. of SNPs	SNPs/kb	No. of predicted genes	Set A (Coding SNPs)a		Set B (Non-synonymous, nonsense and read through coding SNPs)b		Set C (Non-synonymous coding SNPs) c
					No. of SNPs	SNPs/Gene	No. of SNPs	SNPs/Gene	No. of SNPs	SNPs/Gene
1	55.92	268,724	4.8	2,428	7681	3.2	4374	1.8	4186	1.7
2	51.66	234,553	4.5	3,158	8495	2.7	4644	1.5	4463	1.4
3	47.78	282,502	5.9	2,641	9145	3.5	5115	1.9	4913	1.9
4	49.24	240,026	4.9	2,575	7258	2.8	3984	1.5	3842	1.5
5	41.94	184,474	4.4	2,636	7139	2.7	3872	1.5	3741	1.4
6	50.72	294,307	5.8	3,296	10797	3.3	6112	1.9	5898	1.8
7	44.68	235,011	5.3	2,801	8916	3.2	4980	1.8	4807	1.7
8	47.00	266,154	5.7	3,867	11465	3.0	6278	1.6	6052	1.6
9	46.84	257,758	5.5	2,729	8583	3.1	4732	1.7	4574	1.7
10	50.97	247,193	4.8	2,986	8449	2.8	4595	1.5	4428	1.5
11	39.17	179,976	4.6	2,866	7020	2.4	3852	1.3	3717	1.3
12	40.11	192,646	4.8	2,484	7061	2.8	3885	1.6	3753	1.5
13	44.41	277,854	6.3	3,786	10917	2.9	6002	1.6	5817	1.5
14	49.71	238,506	4.8	2,201	7553	3.4	4315	2.0	4161	1.9
15	50.94	320,440	6.3	2,715	9510	3.5	5606	2.1	5390	2.0
16	37.40	251,100	6.7	2,138	10235	4.8	5927	2.8	5694	2.7
17	41.91	223,989	5.3	2,685	7497	2.8	3980	1.5	3831	1.4
18	62.31	412,564	6.6	2,580	12887	5.0	7336	2.8	7045	2.7
19	50.59	254,340	5.0	2,641	7709	2.9	4240	1.6	4078	1.5
20	46.77	240,127	5.1	2,369	7748	3.3	4415	1.9	4231	1.8
Scaffold	23.51	-	-	205	-	-	-	-	-	-
Total	973.58	5,102,244	5.2	55,787	176065	3.2	98244	1.8	94621	1.7

^aSet A represented coding SNPs in which all SNPs appeared in coding regions of predicted genes.

^bSet B represented SNPs removal of synonymous coding SNPs from Set A, including non-synonymous, nonsense and read through coding SNPs.

^cSet C represented only non-synonymous coding SNPs.