In the “Regs” columns, consensus regulators for each gene are marked with purple boxes. In “Motifs”, genes containing MSigDB regulatory motifs, including miRNA motifs, are marked in green. Motifs shown are only those that are enriched in the module. Next, colored boxes indicate host genes identified from screening studies (salmon) and immune response gene sets (violet). Below the rows for module genes are rows for MERLIN-predicted mRNA regulators and MTGLASSO-predicted protein regulators. Gene expression values are scaled (-2,2); protein values are scaled (-1,1) to improve visibility. Time courses entirely missing at the protein level are indicated as “No protein data”.