Table 1.

Human mitochondrial peptides detected assuming abrupt switches between regular and swinger parts of RNA, for peptides where each regular and swinger parts have > 8 amino acids (mass spectra from [33]). Columns are: 1. Peptide number; 2. swinger type; 3. amino acid inserted at stop(s) (‘no’ indicates lack of stops); 4. strand and frame; 5. peptide sequence; 6. PSMs; 7. Xcorr; 8. trypsin miscleavage; 9. PEP; 10–13. Positive strand positions of 5’ and 3’ extreme amino acids of regular and swinger parts of detected peptide; 14. Peptide extremity matching regular transcription. Underlined: peptide swinger part; *, $ marks swinger peptide parts covering previously described swinger reads, respectively previously described swinger peptides [103]. Peptides 8 and 9 differ in posttranslational amino acid modifications (not indicated). Highlighted peptide parts match both translations according to vertebrate mitochondrial, and nuclear (standard) genetic codes. Peptide parts not highlighted match only translation according to the vertebrate mitochondrial genetic code, and are incompatible with translation according to the nuclear genetic code. For example, peptide 3 could be translated in the cytosol on the base of RNA transcribed from mitochondrial inserts in the nuclear chromosome (numts), peptides 5 could not, as peptides 1 and 2 because at least one part of the peptide is not compatible with translation according to the nuclear genetic code. Further analyses (see text) show that fewer detected peptides are compatible with the nuclear genetic code than expected by chance, and that more peptides than expected by chance are compatible only with translation according to the mitochondrial genetic code.

1	2	3	4	5	6	7	8	9	10	11	12	13	14
1	ac	a	r0	YGVSEGLAAPVGAYNVGAFAALYMAANFSFLNQDAVQVADK	3	2.77	0	0.374	3246	3156	3153	3123	5′	29	12
2	ac	v	r1	SCLLAFLMGSLMLTLIVGLSK	20	3.04	0	0.169	3465	3432	3492	3468	3′	12	9
3	ac	r	r0	AWGGGFDVDWWGSDDIVAMR	43	3.06	0	0.745	16188	16161	16158	16131	5′	10	10
4	ag	k	r2	AIGKVAFSTSVMLEVMFLVNK	185	3.06	1	0.082	2289	2262	2319	2292	3′	11	10
5	ag	f	r1	SYTFPPGSSSVACWLGCSPSPTLTLIFGLSK	49	3.38	0	1.000	3456	3432	3522	3459	3′	9	22
6	ag	s	r0	GGSPSDSTTSSQQLLSSILWSK	149	3.98	0	0.755	10125	10101	10164	10128	3′	10	12
7	ag	no	f0	LLGAVPLASASLTIGSLALAGMPFLTGFYSKDHIIETANMS	1	2.37	1	0.931	13704	13767	13644	13701	3′	29	12
8	at	no	f1	FIAYHSPGKVNFVPATAVTR	399	2.77	1	0.196	882	924	855	879	3′	11	9
9	at	no	f1	FIAYHSPGKVNFVPATAVTR	604	2.77	1	0.633	882	924	855	879	3′	11	9
10	at	p	f1	MPNSFNWDVGGNSSKLPVECLVEQGPEAR	1	2.31	1	0.605	1467	1500	1407	1464	3′	17	12
11	at	y	r2	TMSYALTLLLLQTCRGFSR	25	4.34	1	0.836	5601	5574	5631	5604	3′	9	10
12	at	no	r2	DMGDASVMGLSVNEASYDGK	19	2.17	0	0.121	6933	6906	6963	6936	3′	10	10
13	cg	no	f0	TLGQGVAHDLRTNPVDFVGDK	6	2.69	1	0.094	1344	1365	1368	1404	5′	9	12
14	cg	k	r2	LLASLPQPTVVPSTMPTISVRSGVLAGCLIGWWKPK	2	2.00	1	0.592	11103	11058	11163	11106	3′	16	20
15	cg	t	r0	TDNTNHHLTGSAIMTMTAPVK	540	4.89	0	0.653	11625	11601	11661	11628	3′	11	10
16	cg	no	r1	TSQTDLLTDPPITYEFLWAFSVNK$	8	2.03	0	0.592	12150	12126	12195	12153	3′	9	14
17	ct	m	f1	MWEDLMVEAMNSLSSATVGR	880	4.49	0	0.837	1995	2019	2022	2052	5′	9	11
18	ct	e	r0	GMGPMAYLASLALKENMVNNAEGFK	642	2.47	1	0.182	4233	4209	4206	4161	5′	9	16
19	ct	t	f0	NPSLSISVPSTRHVSMPITISSIPPQTTEMCLMK	3	2.54	1	0.866	4290	4350	4251	4287	3′	21	13
20	ct	a	r2	GVNWAKMNIAGYESSYNEQR	5	2.76	1	0.352	10512	10485	10542	10515	3′	10	10
21	ct	m	r0	AMMGDCAVCGTEMMSMCIK	13	2.03	0	0.42	13914	13890	13887	13860	5′	10	9
22	ct	v	r0	NVVWSVAVAAMMKGGVGVGMGGHMEMK	31	3.31	1	0.393	15321	15279	15276	15240	5′	14	13
23	ct	y	f1	DVSGPSSPSSSLMTLTLFSPDLLGDPDNYTLANPLNTPPY	2	2.27	0	0.724	15714	15801	15684	15711	3′	30	10
24	gt	q	r2	NNLFSLYCYLFQLWMMDPEHMNSMALK	1	2.55	0	0.464	13329	13287	13365	13332	3′	16	11
25	ac gt	s	f0	MVGSFMGSGDKPTEPGDSFGEPRSEAGPGPGSTLQSAR	38	2.43	1	0.459	1995	2049	2052	2109	5′	19	19
26	ac gt	h	r2	WSSSLAAPSAFVLVGMSSRHSLLVCGTHVYFFGHNWNK	1	2.71	1	0.218	4428	4389	4500	4431	3′	14	24
27	ac gt	s	f2	SGWVEWSRHSVLLLLSLPVLAAGITMLLTDR	8	3.85	1	1.000	6591	6648	6558	6588	3′	21	10
28	ac gt	y	f0	EATASSAGNDASYDGQSGKDSQATPYTKPTPK	9	2.77	1	0.425	7221	7254	7161	7218	3′	12	20
29	ac gt	x	r1	GDKLFYDXGLLWGAQAGMVR	435	4.06	1	0.901	7503	7479	7476	7446	5′	9	11
30	ac gt	x	r1	RPLSPXGASLWSSVLXTYLR	129	5.31	0	0.516	7476	7452	7509	7479	3′	9	11
31	ac gt	n	f0	VMVTDLLQKSWSPHSYNNYITNR	6	2.39	1	0.971	8157	8193	8127	8154	3′	13	10
32	ac gt	n	f2	SNALNNAGKNAEGHYSSSPNNK	1	2.52	1	1.000	8559	8583	8520	8556	3′	9	13
33	ac gt	c	f1	TPGVVPEPAPAANVHSSCPPCPWLPCFPPSLPPSLTLTK	15	2.75	0	0.296	12564	12624	12510	12561	3′	22	17
34	ac gt	no	f0	SLKQNWDFSFNSSTMVVAGIFLLIR	1	2.11	1	1.000	13299	13338	13266	13296	3′	14	11
35	ac gt	x	f1	EMHLCSXEDSRAHNTWGXLK	13	2.02	1	0.989	16728	16752	16698	16725	3′	10	10
36	ag ct	k	r2	SLAPSGWSLLNLTNPLFSSMNLPTILLHKR	16	4.31	1	0.208	1728	1704	1788	1731	3′	11	19
37	ag ct	d	r1	LGDDWLEDMGNSNQNQLK	3	2.08	0	0.899	3426	3399	3396	3375	5′	9	9
38	ag ct	no	f2	WALFLSGTDSSSVSLAPLAATGSWGGLNQTQLR	7	2.96	0	0.143	5043	5076	4980	5040	3′	12	21
39	ag ct	y	f0	NPPYTWSDYMSIFCFVVCLGGLR	15	2.08	0	0.875	7485	7515	7518	7554	5′	10	13
40	ag ct	e	r1	YVGVEDESAVTNTSTNLTLPTIGQPSNGKK	2	2.14	1	0.472	7809	7779	7776	7719	5′	10	20
41	ag ct	q	r2	GDACWGPVPSQLGGQGQAGVVKGLQGLHQQGGPQNGGR	1	2.24	1	0.804	9456	9387	9384	9342	5′	23	15
42	ag ct	no	f1	AHVEAPIAGSMVLAVTSPGSNNR	37	3.74	0	1.000	11604	11643	11646	11670	5′	14	9
43	ag ct	v	r1	RSPLPGDQVDYVVVHGGMSVQFLWAFSVNK	34	3.08	1	1.000	12180	12126	12213	12183	3′	19	11
44	ag ct	f	f1	FNPFFGFVGPITKPTLNFNK	914	3.51	0	0.423	14874	14904	14847	14871	3′	11	9
45	ag ct	v	r2	HVHPEPSDEVAAYGANSIRCVGVGVVVMLVR	1	3.23	1	0.721	15015	14979	15069	15018	3′	13	18
46	at cg	no	f2	SSLRPYTKCVVFLASEEVK	4	2.41	1	1.000	3135	3129	3126	3096	5′	9	10
47	at cg	e	r2	QAEVFLSLQSSSQNHCFMQHISSGESASYVVPEK	215	3.23	0	0.224	3858	3822	3921	3861	3′	13	21
48	at cg	a	r0	FEDNKWDSFIDFYQTYFLGLAGNAGDCNGYGDMSYK	1	2.82	1	1.000	4074	4002	4107	4077	3′	24	12
49	at cg	e	f2	GISWPKLDEEGGGPFEAGEAPAGLK	59	3.82	1	0.169	5847	5874	5799	5844	3′	9	16
50	at cg	k	f1	SIAGVDVAMAVSGTKTLYLLHSNTHHNR	1	3.31	1	0.886	6201	6231	6147	6198	3′	10	18
51	at cg	r	f2	WLPWLGCSCGWCRLITSTPTYFPHYSR	1	2.49	1	0.941	8070	8097	8022	8067	3′	11	16
52	at cg	c	r2	CYLVGAFHCNLHNQENCK	27	3.92	0	0.690	8247	8223	8220	8196	5′	9	9
53	at cg	e	r1	AGEGLLEVWKASEPNSAVAK	8	3.17	1	0.171	9072	9042	9039	9012	5′	10	10
54	at cg	e	f1	EIFLSLLPQVGSGMGGESSR	11	3.57	0	0.249	9648	9669	9672	9705	5′	9	11
55	at cg	h	f2	GFLCIKLSCVGGCPHLLASSLYYFLTK$	8	2.08	1	0.935	11037	11070	10992	11034	3′	13	17
56	at cg	x	r0	DGGNXGSQGXGAMSSHVPMMKMNLNVVLK$	38	2.25	1	0.766	12321	12291	12288	12237	5′	12	17
57	at cg	r	f0	RPRLTSLPSLLNDINTILWSGGSAGSVNMGSVGEFVGR	1	2.94	1	0.124	15687	15735	15738	15798	5′	18	20
58	acg	n	r2	NTTTLSRTLNVGAVMNNVMVDVAGFNGSLVK	60	2.68	1	1.000	3315	3255	3345	3318	3′	21	10
59	acg	e	f0	SEHTPQLPTETTSSALSDRR	159	3.52	1	0.141	5085	5109	5112	5142	5′	10	10
60	acg	g	r0	WGGSTTNGGEPTGGSTLVGGEYKLQGDR	173	2.52	1	0.351	6483	6450	6531	6486	3′	12	16
61	acg	q	r2	QLVEQPKDTVEWQDMVEVGYNVVR	3	5.28	1	0.401	6891	6852	6924	6894	3′	13	11
62	acg	t	f2	TSKPHPTTTPPPSSSTPLQGLQCGGVRGVQAHQGAGHVQGR	73	3.03	1	0.876	13167	13215	13218	13287	5′	17	24
63	acg	t	f2	TSKPHPTTTPPPSSSTQISPITCGGVRGVQAHQGAGHVQGR	29	2.99	1	0.866	13167	13230	13233	13290	5′	22	19
64	acg	no	f2	GKQEPGLEQLCASSAALGEIPLPNNNPPLPK	17	2.36	1	0.236	13989	14022	13932	13986	3′	12	19
65	acg	e	f0	GLPQHQVHHKPHKPHYETHTQQK	2	2.05	0	1.000	14862	14901	14835	14859	3′	14	9
66	acg	e	f0	GLPQHQVHHQPHKPHYETHTQQK	2	2.05	0	1.000	14865	14901	14835	14862	3′	13	10
67	acg	a	f1	GGFSGPSQILIATILCSFMGK	4	2.24	0	0.319	16266	16305	16242	16263	3′	12	9
68	act	e	r2	GENAGELEGWTATLSCSSPEGPTTLGPLR	6	2.59	0	0.156	3228	3186	3273	3231	3′	14	15
69	act	t	r1	KPAGASPAFFPGGGTSTLKPVDTGATLLTMEGETVSPGSVVK$	2	2.04	0	1.000	5598	5511	5508	5472	5′	30	12
70	act	k	f2	NLPILLLTNVEPQPFPPTPK	27	4.28	0	0.948	11097	11118	11064	11094	3′	9	11
71	act	k	f2	NLPILLLTNVDPQPFPPTPK	197	4.97	0	1.000	11097	11118	11064	11094	3′	9	11
72	act	n	f2	WPLQCRQMSTTSSNFCHFNPNNNPPLPK	3	2.93	1	0.970	13998	14022	13941	13995	3′	9	19
73	agc	r	f2	DQPNPLRPCPAPLTDAMAIR	45	2.19	0	0.272	3945	3969	3972	4002	5′	10	10
74	agc	k	r1	NNSSPIPVPVSSMVMPAAKTGK	365	3.86	1	0.382	6369	6336	6396	6372	3′	13	9
75	agc	v	r2	FQLQSMPVLGSVGGVGGAMGVMR	125	4.64	0	0.958	8157	8115	8184	8160	3′	14	9
76	agc	no	r2	TSYLLLQQPLLWWLCWFKLCVFWK	5	2.01	1	0.163	10749	10716	10785	10752	3′	12	12
77	agc	q	r1	MQQAAFALQWMLLWGQDWQQQWMR	8	2.16	0	0.264	12432	12390	12459	12435	3′	15	9
78	agc	w	r2	MSSTCGNDISMSRISGLFSAWGWK	4	2.04	1	0.739	13098	13068	13137	13101	3′	11	13
79	agc	q	f0	LQQMMQQADVLVAGIFLLIR	13	3.77	0	0.353	13314	13338	13281	13311	3′	9	11
80	agc	v	f0	IVAFSTSSQLGLMVLEVPVGVK	260	4.16	0	0.296	13458	13488	13491	13515	5′	13	9
81	agc	d	r1	FLVDLGLGGVGAGFGSDEGLDDGLCGVWCDFMTVSLLMNK	2	2.80	0	0.029	13971	13887	13884	13854	5′	30	10
82	agt	a	f0	TDAQSGGASAYKAHENILLR	1	2.25	1	1.000	2343	2370	2313	2340	3′	10	10
83	agt	n	f2	LIYSTSITLLPMTGGNGEGMR	194	4.00	0	0.586	5442	5475	5478	5502	5′	12	9
84	agt	d	f2	LIYSTSITLLPMTGGDGEGMR	61	3.96	0	0.460	5442	5475	5478	5502	5′	11	10
85	agt	r	r2	NGVSSSGGVEEGGVEVAVCLLLCVEWWLVRVCLVLLVR	1	2.41	1	0.180	6423	6369	6366	6312	5′	20	18
86	agt	g	r2	AASCGPPSCLPEVGINGGGNGMISTAAGGPGIVGAMNEANG*	1	2.29	0	0.275	8493	8409	8526	8496	3′	30	11
87	agt	a	r2	AAEGNSYAEEFYGEADAGGGYAVEAATAWGGPPLAEAVPR	1	2.43	0	0.518	10143	10068	10065	10026	5′	25	15
88	agt	d	r0	NYSSAMGACQGGSDESNDDGSGVCVWFARGPVVAAPGAVDR	6	2.55	1	0.953	13566	13491	13488	13446	5′	26	15
89	agt	y	f2	RIRPVEVVGAIPHYFLLQYPHHR*	1	2.81	1	0.173	13713	13749	13680	13710	3′	12	11
90	atc	h	f1	HPLWNLHVEGGFSSNTCAVRPAVMGNVESYMHKHK	12	2.55	1	0.124	1413	1452	1455	1515	5′	15	20
91	atc	q	f1	GTLTVQQQHNMPPTFLGNAR	61	3.19	0	0.659	2616	2643	2646	2673	5′	10	10
92	atc	v	r2	GLVIVVVKALGSVGGVGGAMGVMR	429	4.41	1	0.299	8157	8115	8187	8160	3′	14	10
93	atc	v	r2	GLVIVVVKAVGSVGGVGGAMGVMR	1057	4.48	1	0.140	8160	8115	8187	8163	3′	14	10
94	atc	x	r1	MXLMLMIALVAXEXIQMVVLFSVMAGMLGVVGWCR$	1	2.16	0	0.818	13263	13233	13335	13266	3′	11	24
95	atc	k	r0	FNYAFLGWGDWLLLWNYHMGMKVK	17	3.81	1	1.000	14049	14022	14019	13980	5′	10	14
96	atc	q	r2	LWLCSKGGQWLQLGFVMNQFLMNDPK	35	2.60	1	0.630	15408	15381	15378	15333	5′	11	15
97	atg	n	f0	TLGQGVAHEVANNGLHLRPLFSSCTR	1	2.13	0	0.076	1344	1389	1392	1419	5′	17	9
98	atg	d	r1	EPMMHQVSMGKKPVSGGDPPDEDDVDGIK	14	2.57	1	0.129	5061	5007	5088	5064	3′	19	10
99	atg	no	f0	TMASSSPPSVPPAPAGSASASVTVASPPLALVAPVR$	13	2.42	0	1.000	5376	5409	5412	5481	5′	9	27
100	atg	no	f2	GASFLFIWNSLYLLFGAWAGVLGTALSLLIRAELGQPGNL	1	2.24	1	1.000	6054	6141	6024	6051	3′	30	10
101	atg	m	r0	IMRMGAFGIGNMSGENTSTK	65	2.86	1	1.000	6291	6264	6261	6234	5′	10	10
102	atg	p	f0	APPTALVGTDSPHSTEAMWNDLLQCSEPPDSSFFSPPVA	10	2.64	0	0.564	6987	7074	6960	6984	3′	30	9
103	atg	k	r1	KPYTLPMESMNPFCSHSKAK	51	2.17	1	1.000	10284	10263	10314	10287	3′	10	10
104	atg	n	r1	GGAYQGNQSNNLLGGGLVVGWGLDNRLEGLFVVGLMSWSVG	3	3.02	1	0.924	12936	12846	12969	12939	3′	30	11
105	atg	x	r1	EWAEVSSCGEEGXGGADAASEEPTKTTGER	11	2.51	1	0.991	14826	14784	14781	14739	5′	10	19
106	cgt	q	r1	GLYWWDQQYGSGQGGWSLASPLDLGAQWTQGVGFR	1	2.15	0	1.000	228	189	186	126	5′	14	21
107	cgt	x	f0	HPKPKPWEMXLXIPLXIXLLVQXGTALWTLGK	1	2.72	0	0.632	2103	2166	2073	2100	3′	22	10
108	cgt	m	r0	LLQSDHTAFGSAPMSPQPK	2	2.13	0	0.217	2604	2577	2631	2607	3′	10	9
109	cgt	a	f2	AGASEGMTSYMMCLHTHYNLQHSPSNLANMSDK	6	2.06	0	0.034	4278	4347	4251	4275	3′	23	10
110	cgt	t	r2	RPPSGWPSCTSTLVSGATTTTGRGAGVTVETTECGSSTDNM	6	2.51	1	0.584	4989	4902	5028	4992	3′	30	11
111	cgt	no	r0	LFLGMCLKQENPVMMSGLK	393	4.09	1	0.162	12066	12033	12093	12069	3′	10	9
112	cgt	t	f0	VFLLTMTFNQNITLWIWQHIASTGHPGMNATMSCK	2	2.14	0	0.703	12330	12384	12387	12435	5′	19	17
113	cgt	f	f2	MNGTEGHVVHVPDGVASMIYPTLQLMFPTTNSPSK	8	2.57	0	0.942	13107	13161	13059	13104	3′	19	16
114	ctg	v	r0	VFVSLSLVSPFWLNPASTVAVNVNGYNEEVEVGHGYVVK	1	2.98	0	1.000	3126	3078	3192	3129	3′	17	22
115	ctg	e	f1	QSHMKSPEPVGDEEEDEER	26	4.14	1	0.032	3783	3807	3810	3837	5′	9	10
116	ctg	k	r2	DQVRPLVLCMVMLYFTIHLLHAYK	8	2.55	0	0.480	8601	8571	8568	8532	5′	12	12
117	ctg	k	f0	MNNKVFLVFVQTTIPLYLK	791	3.61	1	0.130	14001	14025	13971	13998	3′	9	10
118	ctg	no	f2	SPSSMYPNNKLEEGLYELK	70	4.56	1	0.048	15915	15945	15948	15972	5′	10	9
119	acgt	t	f1	GGAGGTPAATGTRTPSAGSDSVSTDFTQPTTSTTTPTNLK*	5	2.24	1	0.825	2520	2466	2586	2523	3′	18	22
120	acgt	a	r1	FVKAALFLLAGTYPSLGAR	79	4.05	1	0.342	2937	2913	2910	2883	5′	10	9
121	acgt	d	r1	MVEDMTGWADGLISTGDVDPTFSGVPKLSGGSAK	6	2.88	1	0.287	4305	4236	4233	4206	5′	23	11
122	acgt	f	r2	EEMLDGSFCGTFVFGGPVLALFSVMR	1	2.20	0	0.163	4452	4416	4413	4371	5′	14	12
123	acgt	no	r2	VPRQALVPFEVNEASYDGK	141	3.13	1	0.592	6930	6906	6960	6933	3′	9	10
124	acgt	no	r2	VPRQALVPFDVNEASYDGK	388	3.16	1	0.496	6930	6906	6960	6933	3′	9	10
125	acgt	no	f1	SNFLPTTLSRPIRNAPTLLGLGVMHAAHPAGQQMLEQAK	29	2.97	1	1.000	7287	7350	7353	7404	5′	21	18
126	acgt	q	r1	HGQAMLALPVLDPSVVVLGGCQGVGGK	1	2.74	0	0.031	10857	10833	10911	10860	3′	9	18
127	acgt	no	r2	VVGGVGWVPLAWLSLDMLQR	167	3.64	0	0.555	14448	14424	14481	14451	3′	9	11
128	acgt	a	r2	WMSGALILLGGAFCVLGSFRGGVGFVLLPGDVMADAGVER*	4	2.37	1	1.000	14772	14718	14715	14652	5′	18	22
129	actg	d	r1	SSYKDPFAEDADLDNDIALLSLGDLVPLVK	149	3.81	1	0.469	2733	2682	2769	2736	3′	17	13
130	actg	q	r2	GMGQGVHSQQAMVQAKVGAVMQQVMVDVAGGQNVGQPQGR	2	2.36	1	0.409	3363	3276	3273	3246	5′	30	10
131	actg	s	f0	NSVCSDGSARAVSPLAPGLSHK	25	2.75	1	0.560	3273	3303	3306	3315	5′	10	12
132	actg	s	f0	NSVCSDGSARSSSPLAPGLSHK	23	3.21	1	1.000	3273	3309	3312	3339	5′	12	10
133	actg	s	r0	MIMSAWSWKVMSSSMMETSMVEHLLDMIEIRPR	6	2.41	1	0.948	7527	7482	7479	7431	5′	17	16
134	actg	no	f2	SLSPFMITPSSVGVGVMVAVER	59	3.28	0	0.884	7767	7794	7797	7830	5′	11	11
135	actg	t	r0	TPKEQEIGEATVGTGIFNLTAK	2	2.42	1	1.000	8778	8748	8811	8781	3′	11	11
136	actg	no	f2	NQMIQALLITILLGLYFTLLSIVTAGTVFGLR	1	2.29	0	0.690	9834	9894	9897	9930	5′	20	12
137	actg	f	r1	SNAFGESKFTPTETMADTMAAFFFEYCGK	1	2.42	1	0.403	11400	11367	11451	11403	3′	12	17
138	actg	r	r2	WGSSNHEHGGAGCLMGMVQGR	571	4.35	0	0.165	11481	11460	11517	11484	3′	9	12
139	actg	k	r2	WGSSNHEHGGAGGLMGMVQGKGK	67	4.67	1	0.973	11478	11454	11517	11481	3′	10	13
140	actg	d	r0	AMLLDMGAWVSKVETWVDAR	9	4.42	1	1.000	12186	12153	12150	12126	5′	11	9
141	actg	d	r0	AMLLDMGAWVSQVETWVDAR	9	4.42	0	1.000	12186	12153	12150	12123	5′	10	10
142	actg	no	f2	VSAASSGFYRPLPNNNPPLPK	81	3.67	0	1.000	13992	14022	13962	13989	3′	11	10
143	agct	k	r2	SKTLLLMWTLILIQSTSGK	110	3.76	1	0.377	2757	2730	2727	2703	5′	10	9
144	agct	s	f0	ASLSVALDPSGSTNTSLTAKHPNQLASIYFSR	2	2.24	1	0.987	5775	5832	5730	5772	3′	20	12
145	agct	no	f0	KAPNPCLAICALDACMLEK	1222	3.24	1	0.448	5931	5955	5958	5985	5′	9	10
146	agct	s	f0	GGPAGSVFWATIQANPMASMTFSKSYSK	4	2.67	1	0.429	7608	7653	7572	7605	3′	16	12
147	agct	h	r0	TLLNKTSPTFTYLSGEAHLTCHGEK*	4	2.19	1	0.342	13599	13569	13641	13602	3′	11	14
148	agtc	h	f0	SLLPSLSTQHHRYSGWVPGGSGLDIHAPK	1	2.81	1	0.420	2445	2472	2475	2529	5′	12	17
149	agtc	r	f2	AATDDERPTTTGLNSSTTTLLLSR	5	2.66	0	0.303	5214	5247	5163	5211	3′	11	13
150	agtc	e	f1	LTEPLTNGESSWEKASGSMVLAAVLLK$	155	2.13	1	0.932	11628	11658	11580	11625	3′	11	16
151	agtc	m	f0	IVAFSTSSQLGLMASEALAGMK	168	3.53	0	0.790	13458	13494	13497	13521	5′	13	9
152	agtc	w	f0	IVAFSTSSQLGLMASEALAGWK	434	4.72	0	0.715	13458	13494	13497	13521	5′	13	9
153	agtc	d	f0	IVAFSTSSQLGLMASEALAGDK	448	4.33	0	0.817	13458	13494	13497	13521	5′	12	10
154	agtc	r	r1	SLLPFVLFTFTPWSTLGLSMFLWVLGRGGLLFGR*	1	3.40	1	1.000	13758	13725	13821	13761	3′	13	21
155	agtc	no	r2	VAPVMSLIWFVLLPVSGPILEWCGRLMK	16	3.06	1	0.437	14934	14907	14991	14937	3′	9	19
156	atcg	k	r2	ATKTVGGVFGQTNQSPDPK*	1	2.68	1	0.251	321	294	291	267	5′	10	9
157	atcg	y	f1	SVGGGSAGYCVCGAAWGLGEPTKPQYHPPQFMYLTSSK	8	2.37	0	0.517	555	609	498	552	3′	19	19
158	atcg	e	r0	VISSEFIMQSQSPKHELEK	42	3.08	1	0.103	1629	1605	1602	1575	5′	10	9
159	atcg	a	f2	LYSQAFNSSSAQHTHGVGGCGVHWVRFEFK	1	2.25	1	0.669	3324	3369	3372	3411	5′	15	25
160	atcg	no	f2	LMPPLCKIHHESVALLVR	20	2.55	1	1	3936	3912	3909	3885	5′	9	9
161	atcg	g	r1	EKNQAVPEGPSMFISGPTQVK	3	2.47	1	0.573	4383	4353	4413	4386	3′	11	10
162	atcg	g	r1	EKNQAVPEGLAMFISGPTQVK	15	2.81	1	0.57	4380	4353	4413	4383	3′	11	10
163	atcg	g	r1	EKNQAVPEGLSMFISGPTQVK	20	2.80	1	0.57	4383	4353	4413	4386	3′	11	10
164	atcg	no	f0	AHTPKMLVMGPGLLPSGQGLGR	27	2.13	1	0.472	4503	4527	4530	4566	5′	10	12
165	atcg	x	r1	SEASASGSAKAAHDHLDDHPMMXLLFFVNSSMMAHLGK	1	2.79	1	0.34	5115	5064	5175	5118	3′	18	20
166	atcg	q	r2	QDCCDQDGSDEDPSNQNPQPAPKQER	1	2.42	1	0.309	6315	6282	6279	6240	5′	12	14
167	atcg	v	r2	GPVTVQAKVVGSVGGVGGAMGVMR	203	4.83	1	0.074	8160	8115	8187	8163	3′	15	9
168	atcg	v	r2	GPVTVQAKVLGSVGGVGGAMGVMR	181	4.59	1	0.082	8157	8115	8187	8160	3′	14	10
169	atcg	a	f2	AASHPVPVPMTLLMLGLLTNTLTMYQWWR	24	2.66	0	0.053	9477	9537	9450	9474	3′	19	10
170	atcg	a	r0	AMTLHAHAGAMFSEPAVLWVAISAMSAGAEPTAVANAK	2	2.44	0	0.693	11196	11115	11226	11199	3′	28	10
171	atcg	q	r2	GDAGEMLLVNAGLLGAQFLLASK	28	3.47	0	0.068	13719	13695	13692	13653	5′	10	13
172	atcg	e	r2	GDAGEMLLVIAGLLGAEFLLASK	29	3.54	0	0.147	13719	13695	13692	13653	5′	10	13
173	atcg	t	r0	SAEHSLGAGYHSGLMWGGVFKGLATVTLSGSPTTSGENT	1	2.93	1	0.885	15546	15456	15573	15549	3′	30	9
174	atgc	c	f2	NIPFLLFGVNSCCVIPSCNMPSACWINCKCLCK	1	2.36	1	0.239	1872	1911	1815	1869	3′	13	19
175	atgc	e	f0	SVESMLLGEENNFAEEAKAK	641	3.52	1	0.148	1902	1929	1872	1899	3′	11	9
176	atgc	w	f0	WDISQGKTFAVILNLVLYPHPPK	23	3.62	1	0.851	3240	3270	3204	3237	3′	11	12
177	atgc	k	f1	HYLYDMSPLNGIENHGKK	154	3.19	1	0.419	4272	4293	4296	4323	5′	9	9
178	atgc	h	f1	LMHHHYKSSAHHVHSPMIVHHNNYQYK*	35	2.40	1	0.591	6501	6522	6444	6498	3′	9	18
179	atgc	e	r1	IINITAVEENPSGRSSLHK	32	3.62	1	0.040	7155	7131	7128	7101	5′	10	9
180	atgc	e	r1	IINITAVEEIPSGRSSLHK	42	4.38	1	0.156	7155	7131	7128	7101	5′	10	9
181	atgc	no	f2	LLKECLSLASVPATPPYHTFEEPVYMK	12	2.48	1	0.681	7524	7560	7482	7521	3′	13	14
182	atgc	f	f1	AQWLFAFALFLKMPFPFEVMFHMSMK	5	2.10	1	1.000	9006	9051	9054	9081	5′	16	10
183	atgc	n	r1	NYLYYKSYCVSYSTTNNLSFNITK	14	3.54	1	0.304	11298	11268	11265	11229	5′	12	12
184	atgc	k	r0	SKNKPDTNASSNPVMMSGLK	232	3.49	1	0.793	12054	12033	12087	12057	3′	9	11
185	atgc	c	f1	VIFCQMVEFCVMVQVHSDNCADIIEAPLHKMTSK	1	2.13	1	0.623	13428	13452	13353	13425	3′	9	24
186	atgc	y	f1	VVYNGLQAMPEAYSQDFSLLTTFPPHPPSK	12	2.47	0	0.484	13941	14001	13914	13938	3′	21	9