Table 1.

Proportion of Repetitive DNA Sequences Identified In Illumina Data of Ludisia Discolor

Repeat		Lineage/class	Alternative Names	Proportion in 2C Nuclei [%]	Proportion in 2C+P Nuclei [%]
LTR retroelements	Ty1/copia	Maximus-SIRE		8.86	7.55
		Angela		2.58	2.35
		TAR	Tont	0.32	0.32
		Tork	Tnt	0.37	0.37
		Ale	Hopscotch	0.15	0.14
		Ivana-Oryoco		0.13	0.13
		Total Ty1/copia		12.41	10.86
	Ty3/gypsy	Chromoviridae		15.67	14.61
		Ogre-Tat		1.7	1.62
		Athila		0.21	0.20
		Total Ty3/gypsy		17.58	16.43
Other
	Caulimoviridea			0.69	0.62
	LINE			1.10	1.01
	DNA transposons			0.93	0.90
	rDNA sequences			0.10	0.09
	Tandem repeats			3.58	3.60
Unclassified repeats*				7.83	6.61
Nonannotated sequences				39.46	42.36
Chloroplast DNA				1.38	1.17

Note.—LTR, long terminal repeat. Unclassified repeats contain sequences of unclassified LTR retrotransposons and unknown repeats.