Table 5.
Grouping of pRK415 sigma library members.
| No. | Member | Description | 42°C survive | Mean integral value | BLASTP | Growth group | |||
|---|---|---|---|---|---|---|---|---|---|
| 30°C | 42°C | 42°/30° | Identity % | coverage % | |||||
| 1 | rpoD | σ1RpoD-σNCRσ2RpoD-σ3RpoD-σ4RpoD | yes | 17.38 | 16.46 | 0.947 | 100 | 100 | high |
| 2 | sigAmut03 | σ1SigA-σNCRσ2SigA-σ3SigA-σ4SigAm3 | yes | 16.54 | 15.40 | 0.931 | 49 | 98 | high |
| 3 | sigAmut01 | σ1SigA-σNCRσ2SigA-σ3SigA-σ4SigAm1 | yes | 17.67 | 15.32 | 0.867 | 48 | 98 | high |
| 4 | chim06 | σ1SigA-σNCRσ2RpoD-σ3RpoD-σ4RpoD | yes | 17.31 | 14.94 | 0.863 | 88 | 98 | high |
| 5 | chim09 | σ1RpoD-σNCRσ2RpoD-σ3RpoD-σ4SigA | yes | 18.53 | 15.73 | 0.849 | 98 | 99 | high |
| 6 | sigAmut02 | σ1SigA-σNCRσ2SigA-σ3SigA-σ4SigAm2 | yes | 19.78 | 16.08 | 0.813 | 48 | 98 | high |
| 7 | chim14 | σ1SigA-σNCRσ2RpoD-σ3SigA-σ4RpoD | yes | 13.95 | 10.36 | 0.743 | 84 | 98 | high |
| 8 | sigA | σ1SigA-σNCRσ2SigA-σ3SigA-σ4SigA | yes | 16.24 | 10.87 | 0.669 | 48 | 98 | medium |
| 9 | chim13 | σ1RpoD-σNCRσ2SigA-σ3RpoD-σ4SigA | yes | 16.93 | 10.68 | 0.631 | 63 | 99 | medium |
| 10 | chim08 | σ1SigA-σNCRσ2SigA-σ3RpoD-σ4SigA | yes | 18.93 | 11.51 | 0.608 | 51 | 98 | medium |
| 11 | chim12 | σ1SigA-σNCRσ2RpoD-σ3RpoD-σ4SigA | yes | 14.90 | 8.60 | 0.577 | 85 | 98 | medium |
| 12 | chim05 | σ1RpoD-σNCRσ2SigA-σ3SigA-σ4SigA | yes | 18.62 | 10.55 | 0.567 | 59 | 99 | medium |
| 13 | chim01 | σ1RpoD-σNCRσ2RpoD-σ3SigA-σ4SigA | yes | 15.02 | 8.43 | 0.561 | 94 | 99 | medium |
| 14 | chim04 | σ1SigA-σNCRσ2RpoD-σ3SigA-σ4SigA | yes | 16.41 | 7.02 | 0.428 | 73 | 98 | medium |
| 15 | chim10 | σ1SigA-σNCRσ2SigA-σ3SigA-σ4RpoD | no | 16.68 | 1.79 | 0.108 | 50 | 98 | no |
| 16 | chim03 | σ1RpoD-σNCRσ2SigA-σ3RpoD-σ4RpoD | no | 17.26 | 1.79 | 0.104 | 72 | 100 | no |
| 17 | chim11 | σ1RpoD-σNCRσ2SigA-σ3SigA-σ4RpoD | no | 16.4 | 1.00 | 0.061 | 61 | 100 | no |
| 18 | chim07 | σ1RpoD-σNCRσ2RpoD-σ3SigA-σ4RpoD | no | 16.74 | 0.87 | 0.052 | 96 | 100 | no |
| 19 | chim02 | σ1SigA-σNCRσ2SigA-σ3RpoD-σ4RpoD | no | 14.75 | 0.20 | 0.014 | 54 | 98 | no |
| 20 | pRK415 | empty vector | no | 14.63 | 0.19 | 0.013 | NA | NA | no |
Integral values represent the area under the curve for each library member. RpoD sequence was used as query in BLASTP searches to determine identity percentages. Growth group determined by clustering library members. NA, not applicable.