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. 2016 Jul 13;7:1078. doi: 10.3389/fmicb.2016.01078

Table 5.

Grouping of pRK415 sigma library members.

No. Member Description 42°C survive Mean integral value BLASTP Growth group
30°C 42°C 42°/30° Identity % coverage %
1 rpoD σ1RpoD-σNCRσ2RpoD-σ3RpoD-σ4RpoD yes 17.38 16.46 0.947 100 100 high
2 sigAmut03 σ1SigA-σNCRσ2SigA-σ3SigA-σ4SigAm3 yes 16.54 15.40 0.931 49 98 high
3 sigAmut01 σ1SigA-σNCRσ2SigA-σ3SigA-σ4SigAm1 yes 17.67 15.32 0.867 48 98 high
4 chim06 σ1SigA-σNCRσ2RpoD-σ3RpoD-σ4RpoD yes 17.31 14.94 0.863 88 98 high
5 chim09 σ1RpoD-σNCRσ2RpoD-σ3RpoD-σ4SigA yes 18.53 15.73 0.849 98 99 high
6 sigAmut02 σ1SigA-σNCRσ2SigA-σ3SigA-σ4SigAm2 yes 19.78 16.08 0.813 48 98 high
7 chim14 σ1SigA-σNCRσ2RpoD-σ3SigA-σ4RpoD yes 13.95 10.36 0.743 84 98 high
8 sigA σ1SigA-σNCRσ2SigA-σ3SigA-σ4SigA yes 16.24 10.87 0.669 48 98 medium
9 chim13 σ1RpoD-σNCRσ2SigA-σ3RpoD-σ4SigA yes 16.93 10.68 0.631 63 99 medium
10 chim08 σ1SigA-σNCRσ2SigA-σ3RpoD-σ4SigA yes 18.93 11.51 0.608 51 98 medium
11 chim12 σ1SigA-σNCRσ2RpoD-σ3RpoD-σ4SigA yes 14.90 8.60 0.577 85 98 medium
12 chim05 σ1RpoD-σNCRσ2SigA-σ3SigA-σ4SigA yes 18.62 10.55 0.567 59 99 medium
13 chim01 σ1RpoD-σNCRσ2RpoD-σ3SigA-σ4SigA yes 15.02 8.43 0.561 94 99 medium
14 chim04 σ1SigA-σNCRσ2RpoD-σ3SigA-σ4SigA yes 16.41 7.02 0.428 73 98 medium
15 chim10 σ1SigA-σNCRσ2SigA-σ3SigA-σ4RpoD no 16.68 1.79 0.108 50 98 no
16 chim03 σ1RpoD-σNCRσ2SigA-σ3RpoD-σ4RpoD no 17.26 1.79 0.104 72 100 no
17 chim11 σ1RpoD-σNCRσ2SigA-σ3SigA-σ4RpoD no 16.4 1.00 0.061 61 100 no
18 chim07 σ1RpoD-σNCRσ2RpoD-σ3SigA-σ4RpoD no 16.74 0.87 0.052 96 100 no
19 chim02 σ1SigA-σNCRσ2SigA-σ3RpoD-σ4RpoD no 14.75 0.20 0.014 54 98 no
20 pRK415 empty vector no 14.63 0.19 0.013 NA NA no

Integral values represent the area under the curve for each library member. RpoD sequence was used as query in BLASTP searches to determine identity percentages. Growth group determined by clustering library members. NA, not applicable.