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. 2016 Jun 29;17(Suppl 3):435. doi: 10.1186/s12864-016-2784-1

Table 2.

Ranked gene list from the valproate treatment (50 most up- and down-regulated)

Up-regulated genes Down-regulated genes
Rank Genes Fold change P-value Fold change in fish brains Rank Genes Fold change P-value Fold change in fish brains
1 OPRK1 4.03 0.000 −0.29 17673 CMKLR1 −2.81 0.000 0.86
2 NEUROG2 3.55 0.000 17672 ADAMTS2 −2.74 0.000 0.09
3 VSNL1 3.19 0.000 2.84 17671 HIST1H4L −2.67 0.000
4 GALNAC4S-6ST 3.09 0.000 0.96 17670 ELFN1 −2.44 0.000
5 POSTN 2.93 0.000 1.22 17669 COL4A2 −2.39 0.000 −0.42
6 EVX2 2.86 0.000 17668 GREM2 −2.33 0.000
7 SERPINE1 2.69 0.000 −1.45 17667 FLJ45455 −2.32 0.000 0.86
8 ODZ1 2.64 0.000 17666 VCAN −2.31 0.000
9 DRD5 2.34 0.000 −0.23 17665 SOCS3 −2.29 0.000 0.02
10 CSGALNACT1 2.33 0.001 17664 TGFBI −2.27 0.000 −1.11
11 HOXD13 2.31 0.000 17663 C11orf53 −2.26 0.000
12 C3orf57 2.29 0.000 17662 SNAI1 −2.17 0.000 −0.82
13 B3GALT1 2.29 0.000 17661 LOC283480 −2.11 0.000
14 SECTM1 2.28 0.001 17660 ID1 −2.05 0.000 0.23
15 PLAU 2.20 0.001 17659 PPP1R9A −2.03 0.000 −0.05
16 PDE1A 2.19 0.000 17658 LOC646498 −2.02 0.004
17 VIM 2.14 0.000 0.25 17657 RPS16P5 −2.02 0.000
18 MME 2.11 0.000 17656 COL4A1 −1.98 0.000 0.10
19 KCNJ2 2.09 0.000 17655 GLT8D2 −1.98 0.000
20 HS6ST2 2.09 0.000 −0.15 17654 CYP26A1 −1.96 0.000 0.26
21 SNORA42 2.00 0.003 17653 SLC10A1 −1.95 0.004
22 RASEF 1.99 0.000 0.31 17652 PART1 −1.94 0.000
23 APOL6 1.93 0.000 17651 OXTR −1.89 0.000 1.26
24 NCRNA00164 1.91 0.007 17650 PTPLAD2 −1.84 0.007
25 COLQ 1.91 0.000 17649 C9orf131 −1.83 0.001
26 CACNA2D3 1.90 0.000 0.90 17648 FOS −1.80 0.000 −0.63
27 DEGS2 1.90 0.000 17647 C9orf135 −1.79 0.009
28 NHS 1.89 0.000 17646 GLP1R −1.79 0.000
29 PTER 1.89 0.001 0.11 17645 ETS1 −1.79 0.000 −0.79
30 EDIL3 1.87 0.000 −0.41 17644 NXPH3 −1.79 0.000
31 INSM2 1.85 0.000 17643 LOC100128505 −1.79 0.013
32 GFRA3 1.82 0.000 17642 KCTD12 −1.76 0.000 0.49
33 PROKR2 1.82 0.000 17641 ANGPTL4 −1.74 0.000
34 GRM8 1.81 0.001 17640 FOSB −1.73 0.000
35 TLE4 1.79 0.000 17639 MPPED2 −1.72 0.000 −0.62
36 WNT5A 1.77 0.001 −0.38 17638 C11orf92 −1.71 0.003
37 SMOC2 1.77 0.000 −0.26 17637 WDR38 −1.69 0.001
38 VCAM1 1.76 0.014 0.53 17636 GALNT14 −1.68 0.000 0.03
39 FRMD4B 1.74 0.000 0.10 17635 LOC283143 −1.67 0.002
40 PTRF 1.74 0.000 17634 ACCN1 −1.66 0.002
41 DLK1 1.70 0.000 0.69 17633 C14orf53 −1.66 0.002
42 PTCHD1 1.67 0.001 17632 TAPBPL −1.65 0.021
43 GPR126 1.66 0.022 17631 NRP1 −1.63 0.000 1.12
44 ANKDD1B 1.65 0.000 17630 BFSP2 −1.63 0.002
45 MOXD1 1.65 0.002 −1.00 17629 SMAD7 −1.63 0.000 0.08
46 FAM111B 1.65 0.000 17628 HOPX −1.62 0.028
47 LOC728739 1.63 0.002 17627 ERBB4 −1.62 0.000
48 CHRNA10 1.62 0.002 17626 PAPPA2 −1.62 0.000
49 NELL1 1.62 0.000 17625 PCDHGB8P −1.62 0.011
50 NELL2 1.62 0.000 −0.76 17624 LOC284454 −1.60 0.000

Table representing the list of 50 most up- and down-regulated genes in human neuronal cells treated with the valproate. Genes were ranked based on their expression in fold- change in human cells. P-value represents the significance level of the expression change in the mixture treatment than control. Corresponding fold change of genes in fish brains is also reported in this table, where blank cells represents genes that are not found in the fish microarray chip