Table 1.
TaqMan genotyping SNP ID |
Probes (ABI) | Context sequence [VIC/FAM] |
---|---|---|
rs3813946 | C_25599654_10 | CTCACAGCTGCTTGCTGCTCCAGCC[C/T]TGCCCTCCCAGAGCTGCCGGACGCT |
rs311306 | C_1009912_10 | ACCTATCACCATCTAAAACCTTCTT[C/G]CTTATTTATGTACCTGTTTGTTGTT |
rs1567190 | C_8827000_20 | GGAGTATAGGCTACATAGTGAGGAA[C/T]GGTAGTTGATTAAATGGATTGGAGC |
rs17615 | C_12082973_1_ | TATAGTGGATTTACTTTGAAGGGCA[A/G]TAGTCAGATTCGTTGCAAAGCTGAT |
rs17045328 | C_32843029_10 | ATTCTAACCTGAGAAATCTCTGATT[A/G]TAAAGTTGAGTATATTGTTTTTGTC |
rs12032512 | C_26228419_10 | AACCTTAAGCTCAACTATGATTATT[C/G]AGGAATTCAGCATTTATGTCCAAGA |
rs6690215 | C_30168452_10 | TTGGTGAGGATGCAAAGCAAATGGT[C/T]AATATTTGGGAGTTTTAATCAGGAA |
rs17045468 | C_32842997_10 | GGGTCTCAAAAAAAATTAGGGATGT[C/T]ATTTGCAGGGCCTTCCTCATAGGAA |
VIC: 2′-chloro-7′-phenyl-1,4-dichloro-6-carboxyfluorescein. VIC is a fluorescent dye that was originally developed by Applied Biosystems.
FAM: 6-carboxyfluorescein.