TABLE 2.
Diversity measurements in patient-derived samples
| Sample ID | DPSa | Strain | Seasonb | Log10 genomes/μl | Measurement |
|||
|---|---|---|---|---|---|---|---|---|
| DeepSNV |
DeepSNV modified |
|||||||
| Richness | Entropy | Richness | Entropy | |||||
| 1376 | 1 | A/H1N1 | 2013–2014 | 5.3 | 90 | 8.70E−4 | 5 | 6.04E−5 |
| 1401 | 2 | A/H1N1 | 2013–2014 | 5.0 | 110 | 1.04E−3 | 22 | 1.16E−4 |
| 1405 | 3 | A/H1N1 | 2013–2014 | 4.3 | 120 | 1.08E−3 | 30 | 1.55E−4 |
| 1374 | 4 | A/H1N1 | 2013–2014 | 4.6 | 185 | 1.25E−3 | 13 | 1.05E−4 |
| 1227 | 1 | A/H3N2 | 2012–2013 | 5.3 | 79 | 5.21E−4 | 8 | 4.43E−5 |
| 1321 | 1 | A/H3N2 | 2012–2013 | 4.3 | 20 | 2.35E−4 | 3 | 1.70E−5 |
| 1229 | 2 | A/H3N2 | 2012–2013 | 4.6 | 32 | 3.34E−4 | 8 | 7.07E−5 |
| 1245 | 3 | A/H3N2 | 2012–2013 | 4.4 | 197 | 1.38E−3 | 3 | 1.07E−5 |
a
DPS, days after symptom onset.
b
The influenza season was considered to run from September to May.