Extended Data Table 2.
Primers, whole genome sequences and transcriptional regulators used in this study. a,Primers used in this study. b, Whole genome sequences used in this study. c, Transcriptional regulators analyzed in this study
| a
| |
|---|---|
| Name | Sequence 5′ →3′ |
| oJW760 | GGTGTCGACATGACTCAATTCGATAAACAA |
| oJW761 | AATGGCATGCCAATATTTCACCAATTTCAT |
| oJW785 | GTATGAATTCCAATATTTCACCAATTTCAT |
| oJW1011 | GCGGATAACAATTTCACACAGGGTCTTCTTGTTTCCACTGAT |
| oJW1013 | GCGGATAACAATTTCACACAGG CAATATTTCACCAATTTCAT |
| oJW1052 | GGTAGAATTCACGTTATGGTTAAGATTCAA |
| oJW1053 | AATGCTCGAGTATCCTTCTTTCATTTTCAG |
| oJW1054 | GGTACTCGAGTAGCAGGTATCCTAATTTCA |
| oJW1055 | AATGGGATCCCAGTCCAAATGACAATCTAT |
| oJW1137 | ATTGGCATGCTCGACTCTCTAGCTTGAG |
| oJW1199 | TGGTGTCAAAAATAACTCGACCTTCGATATGGGCGGATTCTT |
| oJW1200 | GAATCCGCCCATATCGAAGGTCGAGTTATTTTTGACACCA |
| oJW1201 | TGATGTTTGAGTCGGCTGATAGGGAAAAGGTGGTGAACTAC |
| oJW1202 | GTAGTTCACCACCTTTTCCCTATCAGCCGACTCAAACATCAAA |
| oJW1203 | GGCTAAGAGAACAAGGAGGAGACGGTGGAAACGAGGTCATCATTT |
| oJW1204 | ATGACCTCGTTTCCACCGTCTCCTCCTTGTTCTCTTAGCC |
| oJW1213 | CATAAAGGCTAGGGATAACAGGGTAATCCGCTCACAATTCCACACAAC |
| oJW1214 | GCAGACGTTGCCATATCCAATTCAAGCTGGGGATCCTAGAAGCT |
| oJW1215 | CTTCTAGGATCCCCAGCTTGAATTGGATATGGCAACGTCTGCCC |
| oJW1217 | CAGAGGTTCCGATTTTAAC |
| oJW1218 | TCAATTCAGTAACATCGTTC |
| oJW1221 | GCTTCAGGATGATATTTACAA |
| oJW1222 | CAGGTGTTCGATATAATCAAG |
| oJW1335 | GTAAAACGACGGCCAGTGCGTTTCGGTGATGAAGAT |
| oJW1336 | ATTAAAAACTGGTCTGATCGCTATGCAAGGGTTTATTGTT |
| oJW1337 | AACAATAAACCCTTGCATAGCGATCAGACCAGTTTTTAAT |
| oJW1338 | AGGAAATCCATTATGTACTATTTAGTACGCCTCTTTTCTTTTC |
| oJW1339 | GAAAAGAAAAGAGGCGTACTAAATAGTACATAATGGATTTCCT |
| oJW1902 | CCTGACTGGGAAGAGGATGACG |
| oJW1903 | TCAGCTTTCATGGCTATCATTGAAC |
| oJW1904 | CTGGCTGGAAATACGCTTCTCG |
| oJW1905 | GATCAACGACGCTCAAGAGCTCA |
| oJW1906 | GGACTGTCCGCGTCGTTACGT |
| oJW1907 | GCTTCCTCGCTCCCTTGGG |
| oJW2008 | GGCATGAGCCTGGGCATGTG |
| oJW2009 | CTCCGTCTGCGTTTCGCAGTTC |
| b
| |
|---|---|
| Bacillus genomes | NCBI_accession |
| Bacillus subtilis subtilis 168 | NC_000964.3 |
| Bacillus subtilis subtilis BSP1 | CP003695 |
| Bacillus subtilis QB928 | CP003783.1 |
| Bacillus subtilis 6051HGW | CP003329 |
| Bacillus subtilis spizizenii W23 | NC_014479.1 |
| Bacillus subtilis subtilis RO-NN-1 | CP002906 |
| Bacillus subtilis spizizenii TU-B-10 | NC_016047 |
| Bacillus subtilis BSn5 | NC_014976.1 |
| Bacillus amyloliquefaciens FZB42 | NC_009725.1 |
| c
| |
|---|---|
| Regulator name | Function |
| AbrB | transcriptional regulator for transition state genes |
| AhrC | arginine repressor |
| AraR | transcriptional repressor of the ara regulon (LacI family) |
| BkdR | transcriptional regulator |
| CcpA | transcriptional regulator (LacI family) |
| CodY | transcriptional repressor CodY |
| ComA | two-component response regulator |
| ComK | competence transcription factor (CTF) |
| CtsR | transcriptional regulator |
| DegU | two-component response regulator |
| Fnr | transcriptional regulator (FNR/CAP family) |
| Fur | transcriptional regulator for iron transport and metabolism |
| GInR | transcriptional regulator (nitrogen metabolism) |
| GItC | transcriptional regulator (LysR family) |
| GItR | transcriptional regulator (LysR family) |
| Hpr | transcriptional regulator Hpr |
| HrcA | heat-inducible transcription repressor |
| IoIR | transcriptional regulator (DeoR family) |
| LevR | transcriptional regulator (NifA/NtrC family) |
| LexA | transcriptional repressor of the SOS regulon |
| MntR | manganese transport transcriptional regulator |
| Mta | transcriptional regulator (MerR family) |
| PerR | transcriptional regulator (Fur family) |
| PucR | transcriptional regulator of the purine degradation operon |
| PurR | pur operon repressor |
| ResD | two-component response regulator |
| RocR | transcriptional regulator (NtrC/NifA family) |
| SinR | transcriptional regulator for post-exponenetial-phase-response |
| Spo0A | master regulator of sporulation |
| SpoIIID | transcriptional regulator of mother cell gene expression |
| TnrA | nitrogen sensing transcriptional regulator |
| Xre | Phage PBSX transcriptional regulator |
| Zur | transcriptional regulator (Fur family) |