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. 2016 Jul 15;5(1):26. doi: 10.1007/s13721-016-0134-5

Table 2.

Results collected during the experiments

Experiment Predictor kernel AUC
score
Time
s
Confidence
intervals
I–PKMR–Non-Sequence k exp 0.660 300 [0.655, 0.665]
k loc 0.503 240 [0.499, 0.507]
k phy 0.775 240 [0.771, 0.779]
k exp + k loc + k phy 0.755 350 [0.752, 0.759]
w 1 k exp + w 2 k loc + w 3 k phy 0.799 420 [0.791, 0.807]
II–PKMR–Sequence k pfam 0.797 450 [0.793, 0.801]
k motif 0.782 430 [0.778, 0.786]
k mer 0.725 420 [0.720, 0.731]
k pfam + k motif + k mer 0.817 480 [0.811, 0.823]
w 4 k pfam + w 5 k motif + w 6 k mer 0.821 530 [0.818, 0.824]
III–PKMR–Combined
(sequence and non-sequence)
k phyk pfam 0.812 470 [0.809, 0.816]
k exp + k loc + k phy + k pfam + k motif + k mer 0.831 610 [0.828, 0.834]
w 1 k exp + w 2 k loc + w 3 k phy + w 4 k pfam + w 5 k motif + w 6 k mer 0.840 720 [0.831, 0.849]
IV–pSVM–Non-Sequence k exp 0.791 9020 [0.786, 0.796]
k loc 0.696 7800 [0.692, 0.700]
k phy 0.802 7980 [0.797, 0.807]
k exp + k loc + k phy 0.818 10,100 [0.812, 0.824]
w 1 k exp + w 2 k loc + w 3 k phy 0.877 10,121 [0.871, 0.883]
V–pSVM–Sequence k pfam 0.887 12,060 [0.879, 0.895]
k motif 0.868 12,000 [0.859, 0.877]
k mer 0.840 11,760 [0.836, 0.844]
k pfam + k motif + k mer 0.898 12,220 [0.891, 0.905]
w 4 k pfam + w 5 k motif + w 6 k mer 0.910 12,800 [0.901, 0.919]
VI–pSVM–Combined
(Sequence and non-sequence)
k phy + k pfam 0.890 12,100 [0.882, 0.898]
k exp + k loc + k phy + k pfam + k motif + k mer 0.939 13,420 [0.935, 0.944]
w 1 k exp + w 2 k loc + w 3 k phy + w4 k pfam + w5 k motif + w6 k mer 0.940 14,010 [0.934, 0.946]

These are AUC score (area under the ROC curve as accuracy), time s (Execution times in seconds), and confidence intervals