Table 4.
List of nsSNPs that predicted to be deleterious by both PolyPhen-2 and SIFT tools
|
Gene
Symbol |
SNP | Allele |
AA
substitution |
PolyPhen Score | PolyPhenPerediction | SIFT Score | SIFT prediction | |
|---|---|---|---|---|---|---|---|---|
| 1 | CHUK | rs56948661 | G>A | P623L | 1 | P.D | 0.01 | Damaging |
| 2 | CHUK | rs61732515 | C>G | Q277H | 0.999 | P.D | 0.00 | Damaging |
| 3 | CHUK | rs112432667 | T>C | E492G | 0.954 | P.D | 0.00 | Damaging |
| 4 | FOS | rs74685695 | T>G | V77G | 0.999 | P.D | 0.01 | Damaging |
| 5 | IRF5 | rs112815033 | T>C | L450P | 1 | P.D | 0.01 | Damaging |
| 6 | IRAK4 | rs55944915 | G>A | R391H | 0.999 | P.D | 0.01 | Damaging |
| 7 | IRAK4 | rs114820168 | C>T | R391C | 1 | P.D | 0.00 | Damaging |
| 8 | MAP3K7 | rs77759048 | A>T | W55R | 1 | P.D | 0.00 | Damaging |
| 9 | TBK1 | rs34774243 | A>G | K291E | 0.997 | P.D | 0.00 | Damaging |
| 10 | TBK1 | rs55824172 | C>T | S151F | 0.997 | P.D | 0.00 | Damaging |
| 11 | TIRAP | rs74937157 | T>C | C134R | 1 | P.D | 0.00 | Damaging |
| 12 | TLR1 | rs5743621 | G>A | P733L | 0.995 | P.D | 0.00 | Damaging |
| 13 | TLR1 | rs41311402 | A>G | L697S | 1 | P.D | 0.00 | Damaging |
| 14 | TLR1 | rs56205407 | A>G | I679T | 0.999 | P.D | 0.00 | Damaging |
| 15 | TLR1 | rs117033348 | A>G | L144P | 1 | P.D | 0.04 | Damaging |
| 16 | TLR2 | rs5743706 | T>A | Y715N | 1 | P.D | 0.01 | Damaging |
| 17 | TLR2 | rs56303479 | T>C | L81P | 1 | P.D | 0.00 | Damaging |
| 18 | TLR2 | rs121917864 | C>T | R677W | 1 | P.D | 0.00 | Damaging |
| 19 | TLR3 | rs5743316 | A>T | N284I | 1 | P.D | 0.00 | Damaging |
| 20 | TLR3 | rs112666655 | T>C | L545P | 1 | P.D | 0.00 | Damaging |
| 21 | TLR3 | rs111488413 | C>A | P880Q | 1 | P.D | 0.00 | Damaging |
| 22 | TLR4 | rs77214890 | G>T | D181Y | 1 | P.D | 0.00 | Damaging |
| 23 | TLR4 | rs80197996 | G>T | L470F | 1 | P.D | 0.03 | Damaging |
| 24 | TLR4 | rs55905951 | C>G | A676G | 1 | P.D | 0.00 | Damaging |
| 25 | TLR4 | rs55786277 | C>T | R804W | 0.999 | P.D | 0.01 | Damaging |
| 26 | TLR5 | rs5744176 | T>C | D694G | 1 | P.D | 0.01 | Damaging |
| 27 | TLR5 | rs78098893 | T>C | R752G | 0.997 | P.D | 0.01 | Damaging |
| 28 | TLR6 | rs13102250 | A>C | L105W | 1 | P.D | 0.01 | Damaging |
| 29 | TLR9 | rs55881257 | G>A | R962C | 1 | P.D | 0.01 | Damaging |
Abbreviations: P.D; probablydamaging