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. 2016 May 1;5(2):65–79.

Table 4.

List of nsSNPs that predicted to be deleterious by both PolyPhen-2 and SIFT tools

Gene
Symbol
SNP Allele AA
substitution
PolyPhen Score PolyPhenPerediction SIFT Score SIFT prediction
1 CHUK rs56948661 G>A P623L 1 P.D 0.01 Damaging
2 CHUK rs61732515 C>G Q277H 0.999 P.D 0.00 Damaging
3 CHUK rs112432667 T>C E492G 0.954 P.D 0.00 Damaging
4 FOS rs74685695 T>G V77G 0.999 P.D 0.01 Damaging
5 IRF5 rs112815033 T>C L450P 1 P.D 0.01 Damaging
6 IRAK4 rs55944915 G>A R391H 0.999 P.D 0.01 Damaging
7 IRAK4 rs114820168 C>T R391C 1 P.D 0.00 Damaging
8 MAP3K7 rs77759048 A>T W55R 1 P.D 0.00 Damaging
9 TBK1 rs34774243 A>G K291E 0.997 P.D 0.00 Damaging
10 TBK1 rs55824172 C>T S151F 0.997 P.D 0.00 Damaging
11 TIRAP rs74937157 T>C C134R 1 P.D 0.00 Damaging
12 TLR1 rs5743621 G>A P733L 0.995 P.D 0.00 Damaging
13 TLR1 rs41311402 A>G L697S 1 P.D 0.00 Damaging
14 TLR1 rs56205407 A>G I679T 0.999 P.D 0.00 Damaging
15 TLR1 rs117033348 A>G L144P 1 P.D 0.04 Damaging
16 TLR2 rs5743706 T>A Y715N 1 P.D 0.01 Damaging
17 TLR2 rs56303479 T>C L81P 1 P.D 0.00 Damaging
18 TLR2 rs121917864 C>T R677W 1 P.D 0.00 Damaging
19 TLR3 rs5743316 A>T N284I 1 P.D 0.00 Damaging
20 TLR3 rs112666655 T>C L545P 1 P.D 0.00 Damaging
21 TLR3 rs111488413 C>A P880Q 1 P.D 0.00 Damaging
22 TLR4 rs77214890 G>T D181Y 1 P.D 0.00 Damaging
23 TLR4 rs80197996 G>T L470F 1 P.D 0.03 Damaging
24 TLR4 rs55905951 C>G A676G 1 P.D 0.00 Damaging
25 TLR4 rs55786277 C>T R804W 0.999 P.D 0.01 Damaging
26 TLR5 rs5744176 T>C D694G 1 P.D 0.01 Damaging
27 TLR5 rs78098893 T>C R752G 0.997 P.D 0.01 Damaging
28 TLR6 rs13102250 A>C L105W 1 P.D 0.01 Damaging
29 TLR9 rs55881257 G>A R962C 1 P.D 0.01 Damaging

Abbreviations: P.D; probablydamaging