Supplementary Table 1.
Surface accessibility of wild-type and mutant variants in TLRs network intermediate molecules.
|
Gene
Symbol |
SNP |
AA
substitution |
Class assignment | AA |
AA
position |
RSA | ASA | Z-fit score | |
|---|---|---|---|---|---|---|---|---|---|
| 1 | CHUK | rs56948661 | P623L | Exposed Exposed |
P L |
623 623 |
0.544 0.537 |
77.179 98.306 |
1.190 1.088 |
| 2 | FOS | rs74685695 | V77G | Buried Buried |
V G |
77 77 |
0.082 0.159 |
12.58 12.55 |
-0.799 -0.920 |
| 3 | IRAK4 | rs55944915 | R391H | Exposed Exposed |
R H |
391 391 |
0.500 0.520 |
114.40 94.58 |
-0.611 -0.727 |
| 4 | IRAK4 | rs114820168 | R391C | Exposed Exposed |
R C |
391 391 |
0.500 0.477 |
114.40 67.04 |
-0.611 -0.891 |
| 5 | TBK1 | rs55824172 | S151F | Buried Buried |
S F |
151 151 |
0.132 0.116 |
15.52 23.30 |
0.068 -0.048 |
| 6 | TLR1 | rs5743621 | P733L | Exposed Exposed |
P L |
733 733 |
0.575 0.569 |
81.57 104.23 |
0.687 0.717 |
| 7 | TLR1 | rs41311402 | L697S | Buried Buried |
L S |
697 697 |
0.028 0.030 |
5.05 3.49 |
0.951 0.649 |
| 8 | TLR1 | rs117033348 | L144P | Buried Buried |
L P |
144 144 |
0.038 0.035 |
6.92 5.023 |
0.503 0.657 |
| 9 | TLR2 | rs5743706 | Y715N | Buried Buried |
Y N |
715 715 |
0.152 0.153 |
32.46 22.39 |
0.193 0.253 |
| 10 | TLR2 | rs56303479 | L81P | Buried Buried |
L P |
81 81 |
0.038 0.029 |
6.93 4.10 |
0.362 0.758 |
| 11 | TLR2 | rs121917864 | R677W | Buried Buried |
R W |
677 677 |
0.243 0.255 |
55.60 61.32 |
-0.079 -0.088 |
| 12 | TLR3 | rs5743316 | N284I | Buried Buried |
N I |
284 284 |
0.083 0.088 |
12.16 16.33 |
-1.686 -1.081 |
| 13 | TLR3 | rs111488413 | P880Q | Exposed Exposed |
P Q |
880 880 |
0.401 0.446 |
56.88 79.65 |
0.150 0.108 |
| 14 | TLR4 | rs77214890 | D181Y | Buried Buried |
D Y |
181 181 |
0.240 0.258 |
34.52 55.24 |
0.528 0.277 |
| 15 | TLR4 | rs80197996 | L470F | Buried Buried |
L F |
470 470 |
0.090 0.089 |
16.40 17.88 |
0.080 0.247 |
| 16 | TLR4 | rs55905951 | A676G | Buried Buried |
A G |
676 676 |
0.033 0.034 |
3.62 2.71 |
-0.046 -0.158 |
| 17 | TLR5 | rs5744176 | D694G | Buried Buried |
D G |
694 694 |
0.164 0.173 |
23.57 13.64 |
-0.270 -0.384 |
| 18 | TLR6 | rs13102250 | L105W | Buried Buried |
L W |
105 105 |
0.030 0.031 |
5.51 7.40 |
0.843 0.799 |
| 19 | TLR9 | rs55881257 | R962C | ExposedExposed | R C |
962 962 |
0.419 0.464 |
95.95 65.20 |
0.066 0.045 |
Abbreviations: RSA: Relative Surface Accessibility; ASA: Absolute Surface Accessibility. Values for wild type and mutant variants are presented by red and green color respectively