Table 1.
Summary of genes found in Brachypodium distachyon and T. aestivum, in the colinear Eps-A m 1 region defined between flanking genes FTSH4 (Bradi2g14330) and SMP (Bradi2g14260). Wheat chromosome location (A-genome) and contig identification numbers correspond to the best hit detected using the blast tool at www.wheatgenome.org. Contig names were shortened to retain the contig number only. Brachypodium and T. aestivum gene names were obtained from http://plants.ensembl.org
| Gene | Brachypodium gene | T. aestivum chr. | T. aestivum IWGSC contig | T. aestivum gene | Brachypodium gene description |
|---|---|---|---|---|---|
| GRF11 | Bradi2g14320 | 2AS | 5298309 | Traes_2AS_CA4D79100 | Growth-regulating factor 11-like |
| ADK1 | Bradi2g14310 | 1AL | 3898431 | Traes_1AL_FC50A1181 | Casein kinase I-like |
| CK1-like | Bradi2g14301 | 1AL | 3897325 | Traes_1AL_744933633 | Casein kinase I isoform delta-like |
| ELF3 | Bradi2g14290 | 1AL | 3795905 | Traes_1AL_52C5531A4 | EARLY FLOWERING 3-like |
| GRIK1-like | Bradi1g11340 a | 1AL | 3795905 | Traes_1AL_A78FD4ED4 | Serine/threonine-protein kinase GRIK1-like |
| PWWP1 | Bradi2g14280 | 1AL | – | – | PWWP domain-containing protein |
| ACA7 | Bradi2g14275 | 1AL | 3897564 | – | Alpha carbonic anhydrase 7-like |
| NLE | Bradi2g14270 | 1AL | 3897564 | Traes_1AL_D14E918FD | Notchless protein homolog |
aNot present in the Brachypodium colinear region