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. 2016 Jul 18;11(7):e0159636. doi: 10.1371/journal.pone.0159636

Table 1. The analytical results of correlations between p53 mutations and p53 overexpression.

Reference Country Potential mutagen Sample size TP FP FN TN IHC cut-off/Exon Analytical method (antibody/gene) QUADAS-2
An et al. 2001 [35] Japan HCV 11 of 41 1 7 0 3 NA/exons 5–8 IHC (DO-7)/PCR-DNA sequencing 11
Andersson et al. 1995 [33] Denmark alpha-particles 18 of 36 0 2 1 15 1%/exons 5,7,8 IHC (DO-7)/PCR-DGGE, DNA sequencing 9
Anzola et al. 2004 [15] Spain HCV, alcohol 117 from 78 4 23 8 82 10%/exons 4–8 IHC (DO-7)/PCR-SSCP, DNA sequencing 11
Boix-Ferrero et al. 1999 [20] Spain HCV, alcohol 70 of 129 1 13 1 55 10%/exons 5–8 IHC (Bp 53–11)/PCR-DNA sequencing 11
Bourdon et al. 1995 [14] France HBV 20 5 5 1 9 NA/exons 2–11 IHC (PAb1801)/PCR-DNA sequencing 10
Challen et al. 1992 [22] UK –* 19 1 0 1 17 10%/exons 5–8 IHC (–)/PCR-DNA sequencing 9
Chen et al. 2003 [43] China HBV 33 16 5 0 12 NA/exons 2–8 IHC (Santa)/PCR-DNA sequencing 10
Cheung et al. 2006 [4] China HBV 55 17 11 9 18 NA/exons 4–9 IHC (DO-7)/PCR-DNA sequencing 11
De Benedetti et al. 1996 [41] USA Contraceptive 10 of 11 1 2 0 7 1%/exons 4–9 IHC (–)/PCR-DNA sequencing 9
Greenblatt et al. 1997 [29] China HBV 16 1 5 2 8 1%/exons 4–8 IHC (CM-1)/PCR-DNA sequencing 9
Gross-Goupil et al. 2003 [16] France HBV, HCV 18 0 4 2 12 10%/exons 2–11 IHC (DO-7)/PCR-DNA sequencing 10
Hsia et al. 2000 [24] China –* 28 16 3 1 8 10%/exons 5–8 IHC (–)/PCR-DNA sequencing 9
Hsu et al. 1993 [26] China HBV, HCV 78 of 184 30 9 10 29 10%/exons 2–11 IHC (DO-7)/PCR-SSCP, DNA sequencing 9
Jablkowski et al. 2005 [9] Poland HBV 9 of 20 4 1 1 3 50%/exons 5–8 IHC (DO-7)/PCR-DNA sequencing 10
Kang et al. 1998 [39] Korea HBV 8 of 13 2 2 0 4 20%/exons 5–8 IHC (DO-7)/PCR-SSCP, DNA sequencing 9
Kubicka et al. 1995 [32] Germany HBV 20 1 0 1 18 30%/exons 5–8 IHC (PAb1801/PAb240) /PCR-DNA sequencing 9
Lee et al. 2002 [25] Korea HBV 36 from 34 6 9 1 20 5%/exons 4–10 IHC (BP53-12)/PCR-SSCP, DNA sequencing 10
Lunn et al. 1997 [42] China HBV, AFB1 105 22 13 7 63 5%/exons 5–9 IHC (DO-1/Ab-6)/PCR-SSCP, DNA sequencing 9
Luo et al. 2001 [45] China 21 6 5 3 7 10%/exons 5–8 IHC (DO-7)/PCR-SSCP 10
Mitsumoto et al. 2004 [31] Japan HCV 50 13 1 8 28 10%/– IHC (DO-7)/Yeast p53 Functional Assay, DNA sequencing 9
Mohamed et al. 2008 [5] Egypt HBV, HCV 30 7 9 4 10 10%/exons 5–8 IHC (DO-7)/PCR-SSCP, DNA sequencing 11
Okada et al. 2003 [27] Japan HCV 10 of 22 5 1 0 4 10%/exons 5–9 IHC (DO-7)/PCR-DNA sequencing 10
Peng et al. 1998 [23] China 70 21 9 2 38 5%/exon 7 IHC (DO-7)/RFLP 9
Qi et al. 2015 [8] China HBV, AFB1 397 208 58 15 116 25%/exons 1–11 IHC (Abcam)/PCR-DNA sequencing 11
Qin et al. 1998 [38] China HBV 26 of 31 5 1 1 19 NA/exons 5–9 IHC (PAb1801/PAb240) /PCR-DNA sequencing 9
Rashid et al. 1999 [10] China HBV 24 10 3 2 9 NA/exons 2–9 IHC (DO-7)/PCR-DNA sequencing 11
Ryder et al. 1996 [37] Germany HBV, HCV 37 of 38 15 3 2 17 80%/exons 5–8 IHC (DO-1)/PCR-SSCP, DNA sequencing 10
Sanefuji et al. 2010 [34] Japan HCV 79 of 82 13 34 0 32 10%/exons 5–8 IHC (DO-7)/PCR-DNA sequencing 11
Shieh et al. 1993 [36] USA HBV, HCV 18 1 0 0 17 NA/exon 7 IHC (PAb1801)/PCR-DNA sequencing 9
Soini et al. 1996 [21] Mexico AFB1 14 of 21 2 4 1 7 1%/exon 7 IHC (CM-1)/PCR-DNA sequencing 9
Stern et al. 2001 [28] China HBV, AFB1 48 of 64 15 15 3 15 NA/exon 7 IHC (CM-1)/PCR-DNA sequencing 10
Szymańska et al. 2004 [11] Gambia HBV 28 of 29 9 4 5 10 10%/exons 5–8 IHC (CM-1)/PCR-RFLP, DNA sequencing/SOMA 9
Volkmann et al. 2001 [30] Germany HBV, HCV 39 8 3 3 25 10%/exons 5–9 IHC (DO-1)/PCR-SSCP, DNA sequencing 10
Zekri et al. 2006 [40] Egypt HCV 25 7 6 3 9 10%/exons 5–8 IHC (DO-7)/PCR-SSCP, DNA sequencing 9
Zhang et al. 2006 [12] China HBV, AFB1 40 9 5 2 24 5%/exons 5–8 IHC (DO-7)/PCR-DNA sequencing 10
Zhou et al. 1997 [44] China HBV 32 2 6 0 24 NA/exon 7 IHC (DO-1/Ab-6)/PCR-RFLP 9

HBV/HCV: hepatitis B/C virus; AFB1: aflatoxin B1; IHC: immunohistochemistry; PCR: polymerase chain reaction; SSCP: single-strand conformation polymorphism; RFLP: restriction fragment length polymorphism; SOMA: short oligonucleotide mass spectrometry analysis; DGGE: denaturing gradient gel electrophoresis; QUADAS, Quality Assessment of Diagnostic accuracy studies.