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. 2015 Sep 11;282(21):4218–4241. doi: 10.1111/febs.13417

Table 4.

GC‐MS analysis of GLC and its reaction products 2‐keto‐GLC, 3‐keto‐GLC and 2,3‐diketo‐GLC. The reaction mixture contained 1 mL of 10 mm potassium phosphate buffer (pH 7.0), 1 U of AmPDH or its respective variant, 45 mm 1,4‐benzoquinone as electron acceptor and, initially, 16.7 mm GLC. Samples (200 μL) were taken after 3, 8 and 120 min of reaction time, respectively. After deproteinization through a 10 kDa ultrafiltration membrane, the filtrate was used for subsequent GC‐MS analysis. For GLC and 2‐keto‐GLC, an external calibration was possible with commercially available standards, allowing for a quantitative determination of their concentrations (mm) with a detection limit of 0.2 μm. Because no standards were commercially available for 3‐keto‐GLC and 2,3‐diketo‐GLC, only semiquantitative results (relative concentrations in mm) could be calculated, based on the peak‐area‐ratios of the respective analyte to 2‐keto‐GLC at a given mass to charge ratio. To obtain the ‘Ratio’, the percentage of each compound with respect to the sum of (relative) concentrations was calculated for each variant

Variant Reaction time (min) Concentration (mm) Relative concentration (mm) Ratio (%)
GLC 2‐keto‐GLC 3‐keto‐GLC 2,3‐diketo‐GLC GLC 2‐keto‐GLC 3‐keto‐GLC 2,3‐diketo‐GLC
AmPDH 3 2.69 1.72 0.000 0.061 60.2 38.5 0.0 1.4
8 2.43 1.69 0.001 0.273 55.4 38.4 0.0 6.2
120 0.43 1.33 0.026 1.271 14.0 43.6 0.9 41.6
H103A 3 3.42 0.597 0.000 0.100 83.1 14.5 0.0 2.4
8 2.91 1.65 0.004 0.342 59.3 33.7 0.1 7.0
120 1.62 1.49 0.024 1.108 38.2 35.1 0.6 26.1
Q392A 3 3.07 1.50 0.002 0.186 64.5 31.6 0.0 3.9
8 2.63 1.87 0.002 0.724 50.3 35.8 0.0 13.9
120 1.04 1.49 0.032 1.540 25.4 36.2 0.8 37.6
Y510A 3 3.35 0.126 0.000 0.002 96.3 3.6 0.0 0.1
8 3.40 0.386 0.000 0.034 89.0 10.1 0.0 0.9
120 2.73 1.59 0.010 0.401 57.7 33.6 0.2 8.5
V511F 3 3.62 0.311 0.001 0.005 91.9 7.9 0.0 0.1
8 3.60 1.09 0.001 0.030 76.3 23.1 0.0 0.6
120 2.42 2.46 0.025 0.387 45.7 46.5 0.5 7.3
V511W 3 3.34 1.70 0.001 0.058 65.5 33.4 0.0 1.1
8 3.04 2.46 0.010 0.331 52.0 42.1 0.2 5.7
120 0.275 1.84 0.150 1.564 7.2 48.0 3.9 40.9
H556A 3 3.86 0.293 0.001 0.018 92.5 7.0 0.0 0.4
8 3.46 0.811 0.000 0.075 79.6 18.6 0.0 1.7
120 3.54 2.80 0.001 0.466 52.0 41.2 0.0 6.8
H556N 3 3.92 0.090 0.000 0.003 97.7 2.2 0.0 0.1
8 3.66 0.187 0.000 0.012 94.8 4.9 0.0 0.3
120 3.45 1.17 0.001 0.110 72.9 24.7 0.0 2.3