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. 2016 Jul 19;11(7):e0159558. doi: 10.1371/journal.pone.0159558

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© 2016 Tohya et al

This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

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Fig 2 — The tree was constructed using the maximum parsimony method for genome-wide SNPs in 52 S. suis isolates. The 52 isolates analyzed were composed of 26 encapsulated and unencapsulated isolate pairs from 17 porcine farms, indicated by the following symbols: blank circles for encapsulated, and filled circles for unencapsulated isolates, with pair Nos. and farm identifiers (colored rectangles) along with the symbols. The isolates were separately clustered into two STs, ST1 and ST28; a detailed tree structure in each ST is shown as an enlarged tree. Several ends of the enlarged tree in ST28 are further enlarged. Seventeen colors are used to show distribution of farms in the tree. Only the bootstrap values >50% are indicated on the branches.