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. Author manuscript; available in PMC: 2017 Feb 1.

Published in final edited form as: Proteins. 2016 Jan 11;84(2):232–239. doi: 10.1002/prot.24968

(a) The SR calculation of $P_{p}^{r, f}$ (using optimal f_threshold value) and $P_{p}^{f}$ (using 1kcal/mol threshold) when taking N>5. (b) The SR calculation of $P_{p}^{r, f}$ (using optimal f_threshold value) and $P_{p}^{f}$ (using 1kcal/mol threshold) when taking N>10. (c) The SR calculation of $P_{p}^{r, b}$ (using optimal f_threshold value) and $P_{p}^{b}$ (using 1kcal/mol threshold) when taking N>5. (d) The SR calculation of $P_{p}^{r, b}$ (using optimal f_threshold value) and $P_{p}^{b}$ (using 1kcal/mol threshold) when taking N>10. N>5 and N>10 means only the SAVs, which are observed at least five or ten times in the datasets, will be used for SR calculation.