Table 5. Significant marker-trait associations identified through multi-trait mixed model (MTMM) and qualified FDR criteria.
MTMM was performed for pair of correlated traits (for significant and high correlation; p value ≤0.05, r2 value ≥ 2.5).
| Trait combination | Marker | Chromosome | p-value | ||
|---|---|---|---|---|---|
| Full test | Interaction | Common | |||
| PH / PL | gwm533.1* | 3B | 1.4 × 10−5 | - | - |
| PH / DTM | gwm337 | 1D | - | 1.5 × 10−4 | - |
| gwm294 | 2A | 7.3 × 10−5 | - | - | |
| wmc498 | 2B | 6.3 × 10−7 | 1.7 × 10−7 | - | |
| gwm501 | 2B | - | 1.1 × 10−4 | - | |
| gwm533.1* | 3B | 1.1 × 10−4 | - | - | |
| wmc653 | 3B | 7.8 × 10−5 | 1.8 × 10−5 | - | |
| gwm108 (b) | 3B | - | 8.7 × 10−5 | - | |
| wmc533.1 | 3B | - | 2.3 × 10−4 | - | |
| cfd152 | 3D | 2.95 × 10−5 | 5.3 × 10−6 | - | |
| wmc219 | 4A | - | 2.2 × 10−4 | - | |
| gwm165 | 4A | - | 5.1 × 10−4 | - | |
| wmc52 | 4D | - | 2.7 × 10−4 | - | |
| wmc289 | 5B | - | 3.7 × 10−4 | - | |
| gwm276 | 7A | 1.1 × 10−4 | 4.6 × 10−5 | - | |
| PH / TGW | gwm413 | 1B | - | 6.2 × 10−5 | - |
| gwm107* | 3B | 1.4 × 10−5 | - | 6.4 × 10−5 | |
| PH / SV | gwm99 | 1A | 2.4 × 10−4 | - | - |
| wmc598 | 2A | 2.3 × 10−5 | 1.4 × 10−5 | - | |
| wmc522 | 2A | 2.4 × 10−4 | 4.5 × 10−5 | - | |
| wmc764 | 2B | 5.6 × 10−8 | 6.6 × 10−5 | 2.9 × 10−5 | |
| wmc532 | 3A | 1.3 × 10−7 | 3.4 × 10−4 | 1.4 × 10−5 | |
| gwm533.1* | 3B | 1.5 × 10−4 | - | 2.7 × 10−5 | |
| wmc291 | 3B | 3.8 × 10−4 | 1.3 × 10−4 | - | |
| barc164 | 3B | - | 4.3 × 10−4 | - | |
| gwm664 | 4B | - | 4.7 × 10−4 | - | |
| wmc233 | 5D | - | - | 1.9 × 10−4 | |
| wmc256 | 6A | 4.1 × 10−4 | - | - | |
| wmc473 | 6B | - | 1.8 × 10−4 | - | |
| wmc396* | 7B | 1.3 × 10−11 | 2.7 × 10−8 | 1.2 × 10−5 | |
| wmc121 | 7D | 4.0 × 10−4 | - | - | |
| FLL / SL | psp3094 | 7D | 1.6 × 10−6 | 1.3 × 10−6 | - |
| DTH / DTM | wmc764 | 2B | - | - | 5.4 × 10−5 |
| gwm276 | 7A | - | - | 7.9 × 10−5 | |
| gwm44 | 7D | - | - | 1.9 × 10−4 | |
| DTM / SKS | gwm99 | 1A | - | 5.3 × 10−5 | - |
| gwm294 | 2A | - | 1.6 × 10−4 | - | |
| wmc477 | 2B | - | 3.6 × 10−4 | - | |
| wmc764 | 2B | - | 5.0 × 10−4 | - | |
| wmc269 | 3A | - | 2.0 × 10−4 | - | |
| wmc516 | 4A | 1.6 × 10−5 | 2.8 × 10−6 | - | |
| gwm149 | 4B | - | 2.1 × 10−4 | - | |
| gwm66 | 4B | - | 3.6 × 10−4 | - | |
| wmc233 | 5D | 8.2 × 10−5 | 1.6 × 10−5 | - | |
| wmc473 b | 7D | - | 2.4 × 10−4 | - | |
| SKS / GS | wmc75 | 5B | - | 5.6 × 10−5 | - |
| SKS / TGW | gwm107 | 3B | 2.7 × 10−5 | - | - |
| TGW / HI | gwm294 | 2A | 1.3 × 10−6 | 1.5 × 10−6 | - |
| gwm107* | 3B | 7.9 × 10−5 | - | - | |
| HI / SV | gwm99 | 1A | 1.5 × 10−4 | 8.7 × 10−5 | - |
| wmc626 | 1B | - | 2.8 × 10−4 | - | |
| gwm294* | 2A | 2.1 × 10−5 | 3.7 × 10−5 | - | |
| wmc598 | 2A | 3.2 × 10−4 | - | - | |
| wmc764 | 2B | 6.0 × 10−8 | 1.4 × 10−6 | - | |
| wmc245 | 2B | 1.6 × 10−4 | 6.0 × 10−5 | - | |
| wmc532 | 3A | 1.9 × 10−8 | 1.5 × 10−8 | - | |
| wmc396* | 7B | 2.4 × 10−12 | 2.9 × 10−10 | - | |
| wmc121 | 7D | 3.5 × 10−4 | 1.8 × 10−4 | - | |
* MTAs also identified through single locus analysis(qualified FDR).