. 2016 Jul 21;11(7):e0159343. doi: 10.1371/journal.pone.0159343

Table 8. A summary of the 17 superior genotypes and markers with desirable alleles associated with respective traits.

Number given after bar (-) represents desirable allele size (in bp). Two markers, separated by “/”, are involved in epistatic interaction; and among these pairs of interacting markers, the first marker was identified by either one, two, or by all the three approaches (SLST, MLMM, MTMM). Eight genotypes considered more important are highlighted with bold.

S. No.	Genotype	Trait	Trait value	Desirable marker allele/combinations of alleles
1	WH542	HI	102.4	gwm294-83^a^,^f
1	WH542	PH	82cm	gwm533.1–122^a^,^f
2	SHARBATI SONORA	DTH	84	gwm276-73^e, gwm44-182^e/wmc764-193, wmc764-193^e/gwm99-124
2	SHARBATI SONORA	DTM	126	gwm294-100^e/wmc473-141, gwm44-182^e/gwm149, gwm66^e, gwm276-73^c, wmc764-193^c
3	K816	PH	72cm	Wmc598-null^e
4	LAL BAHADUR	PH	62cm	gwm296-124^b, gwm349-null^b, gwm107-170c, wmc764-193^c, wmc532-195^c, wmc396-145^c, wmc522-224 ^e, gwm294-105^e/ wmc219-126
5	DWR39	AL	11.59mm	wmc597-191^d, wmc245-154^d, gwm480-334^d/wmc396-145, gwm251-170^d/cfda-218, wmc75-234^d/gwm302
6	UP2425	SL	13.58cm	wmc702-229^b
7	VL616	SL	14.55cm	psp3094-136^e
8	KALYAN SONA	GS	78	gwm413-77^b, wmc24-152 ^b
9	HW1085	GS	81	gwm425-133,wmc621-151 (interacting loci of wmc24)
10	KENPHAD	TGW	48.2g	gwm11-218^b/ cfd2–171
11	NI179	TGW	48.5g	gwm107-192^a^,^f, wmc48-194^e/wmc364-192, barc164-263^b, wmc593-146^b, wmc516-137^b
12	HYB11	GPC	15.32%	wmc219-152^d/wmc702-234/barc24-110
13	WG357	HI	110.6	gwm361-134^a, wmc245-145^e, wmc532-195^e, wmc121-333^e
14	A90	HW	95.1g	wmc598-null^a^,^d, wmc827-237^a^,^d, gwm459-122^a^,^d, wmc419-160^d, wmc313-176^d
15	NI345	SV	106.4ml	wmc598-161^f/ wmc498-164, wmc532-195^f/barc170-174, wmc396-167^a^,^f, gwm361-134^a, gwm111-null^a, gwm533.1–161^c, wmc233-190^c
16	NP120	SV	96.5ml	wmc121-328^f/wmc473-212
17	NP721	SV	89.9ml	gwm99-103^e, wmc764-193^e, wmc245-154^e/wmc405-115

^a SLST (qualified FDR),

^b SLST only (did not qualified FDR but reported in earlier studies),

^c MTMM only,

^d SLST+MLMM,

^e SLST+MTMM,

^f SLST+MLMM+MTMM