Table 1.
Strain | Serotype | Lineage | Year | Sources | Contigs | N50 size | STs |
---|---|---|---|---|---|---|---|
SHL001 | 1/2a | II | 2007 | Human# | 33 | 476,844 | 381 |
SHL004 | 1/2a | II | 2008 | Human | 18 | 579,300 | 8 |
SHL005 | 1/2a | II | 2008 | Human | 17 | 437,049 | 7 |
SHL009 | 1/2a | II | 2012 | Human* | 32 | 541,739 | 91 |
SHL011 | 1/2a | II | 2011 | Human | 17 | 543,519 | 29 |
SHL013 | 1/2a | II | 2012 | Human* | 20 | 358,858 | 391 |
SHL002 | 1/2b | I | 2007 | Human | 22 | 476,844 | 3 |
SHL007 | 1/2b | I | 2011 | Human | 43 | 355,359 | 87 |
SHL008 | 1/2b | I | 2012 | Human | 26 | 293,078 | 3 |
SHL010 | 1/2b | I | 2012 | Human | 84 | 259,950 | 2 |
SHL012 | 1/2b | I | 2010 | Human# | 23 | 355,398 | 87 |
SHL006 | 1/2c | II | 2010 | Human | 30 | 476,139 | 9 |
SHL015 | 1/2a | II | 2008 | Beef | 15 | 425,029 | 8 |
SHL017 | 1/2a | II | 2004 | Bean | 17 | 726,747 | 381 |
SHL014 | 1/2c | II | 2008 | Pork | 23 | 477,674 | 9 |
SHL016 | 1/2c | II | 2008 | Fish | 17 | 512,641 | 9 |
SHL018 | 1/2c | II | 2004 | Vegetables | 18 | 429,471 | 9 |
Cerebrospinal fluid; all other clinical strains were isolated from blood.
The host of these strains died.