| generate_pileup.sh (1 cpu) |
Number of input paired read sets |
19 |
| Average runtime per pileup (hh:mm:ss) |
00:42:01 |
| Total runtime (hh:mm:ss) |
13:18:14 |
| generate_core_alignment.sh (1 cpu) |
Total pileup alignment length |
5,947,114 bp |
| 90%-shared core alignment length |
855,355 bp |
| Total runtime (hh:mm:ss) |
00:15:32 |
| remove_recombination.sh (10 cpus) |
Number of core polymorphic sites |
177,961 bp |
| core SNP alignment length (w/o putative recombinant SNPs) |
174,819 bp |
| Computational time (hh:mm:ss) |
04:25:32 |
| Actual runtime (hh:mm:ss) |
00:29:28 |
| Figure output runtime (hh:mm:ss) |
00:13:03 |
| generate_phylogeny.sh (raxmlHPC-PTHREADS-AVX, 10 cpus) |
Time to optimize RAxML parameters (hh:mm:ss) |
00:02:32 |
| Time to compute 20 ML searches (hh:mm:ss) |
00:34:53 |
| Number of bootstrap replicates (RAxML autoMRE) |
50 |
| Time to compute 50 bootstrap searches (hh:mm:ss) |
01:02:09 |
| Total runtime (hh:mm:ss) |
01:39:34 |
| All |
Total runtime (hh:mm:ss) |
15:55:51 |
