Table 3. Species from a consensus microbial signature for CRC classification of fecal metagenomes (Zeller et al., 2014).
Only species reported as having a log odds ratio larger than ±0.15 are listed here, together with strains and Bioproject IDs used as models in the present study.
| Species | Strain | Abbrv. | Bioproject |
|---|---|---|---|
| Higher in CRC patients | |||
| Fusobacterium nucleatum subsp. vincentii | ATCC 49256 | Fnv | PRJNA1419 |
| Fusobacterium nucleatum subsp. animalis | D11 | Fna | PRJNA32501 |
| Peptostreptococcus stomatis | DSM 17678 | Pst | PRJNA34073 |
| Porphyromonas asaccharolytica | DSM 20707 | Pas | PRJNA51745 |
| Clostridium symbiosum | ATCC 14940 | Csy | PRJNA18183 |
| Clostridium hylemonae | DSM 15053 | Chy | PRJNA30369 |
| Lactobacillus salivarius | ATCC 11741 | Lsa | PRJNA31503 |
| Higher in healthy patients | |||
| Clostridium scindens | ATCC 35704 | Csc | PRJNA18175 |
| Eubacterium eligens | ATCC 27750 | Eel | PRJNA29073 |
| Methanosphaera stadtmanae | DSM 3091 | Mst | PRJNA15579 |
| Phascolarctobacterium succinatutens | YIT 12067 | Psu | PRJNA48505 |
| unclassified Ruminococcus sp. | ATCC 29149(a) | Rsp | PRJNA18179 |
| Streptococcus salivarius | SK126 | Ssa | PRJNA34091 |
Notes.
a
R. gnavus.