Table IV.

Power comparison for two binary traits. p : allele frequency at the QTL, m : allele frequency at the marker locus. Penetrance vectors (f0,f1,f2) for the disease 1 and 2 are presented in consecutive rows.

	p=0.2,m=0.2				p=0.1,m=0.2
LD	Penetrances	MultiPhen	BAMP	DAMP	Penetrances	MultiPhen	BAMP	DAMP
O(TIerror)	both recessive	0.051	0.052	0.052	both additive	0.052	0.051	0.051
0.33	(0.25, 0.08, 0.08)	0.19	0.23	0.24	(0.12,0.08,0.04)	0.15	0.15	0.17
0.66	(0.25, 0.08, 0.08)	0.52	0.69	0.71	(0.12,0.08,0.04)	0.47	0.47	0.50
0.95		0.75	0.93	0.93		0.78	0.78	0.80

	p=0.1,m=0.3				p=0.1,m=0.2
LD	Penetrances	MultiPhen	BAMP	DAMP	Penetrances	MultiPhen	BAMP	DAMP
0 (TIerror)	both dominant	0.052	0.051	0.051	recessive,additive	0.054	0.052	0.052
0.33	(0.1, 0.1, 0.02)	0.32	0.31	0.33	(0.25, 0.08, 0.08)	0.11	0.11	0.12
0.66	(0.1, 0.1, 0.02)	0.88	0.87	0.88	(0.12, 0.08, 0.04)	0.28	0.29	0.31
0.95		0.99	0.99	0.99		0.50	0.53	0.55