Table 2. Gene content in Ericaceae plastomes.
| Species | Arbutus unedo | Vaccinium macrocarpon | Pyrola rotundifolia | Monotropa uniflora | Hypopitys monotropa |
|---|---|---|---|---|---|
| Ribosomal proteins, small subunit | rps2, rps3, rps4, rps7, rps8, rps11, rps12*, rps14, rps15, Ψrps16, rps18, rps19 | rps2, rps3, rps4, rps7, rps8, rps11, Ψrps12, rps14, rps15, Ψrps16, rps18, rps19 | rps2, rps3, rps4, rps4-like gene (ORF357), rps7, rps8, rps11, rps12*, rps14, rps15, rps16, rps18, rps19 | rps2, rps3, rps4*, rps7, rps8, rps11, rps12, rps14, rps18, rps19 | rps2, rps3, rps4, rps7, rps8, rps11, rps12, rps14, rps18, Ψrps19 |
| Ribosomal proteins, large subunit | rpl2, rpl14, rpl16, rpl20, rpl22, rpl23, rpl32, rpl33, rpl36 | rpl2, rpl14, rpl16, rpl22*, rpl23, rpl32, rpl33, rpl36 | Ψrpl2, rpl14, rpl16, rpl20, rpl22, rpl23, rpl32, rpl33, rpl36 | rpl2, rpl14, rpl16, rpl20, rpl22, rpl33, rpl36 | rpl2, rpl14, rpl16, rpl20, rpl22, rpl23, rpl32, rpl33, rpl36 |
| Ribosomal RNA | rrn16, rrn23, rrn5, rrn4.5 | rrn16, rrn23, rrn5, rrn4.5 | rrn16, rrn23, rrn5, rrn4.5 | rrn16, rrn23, rrn5, rrn4.5 | rrn16, rrn23, rrn5, rrn4.5 |
| Transfer RNA | trnA-UGC, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-GCC, trnG-UCC, trnH-GUG, trnI-CAU, trnI-GAU, trnK-UUU, trnL-CAA, trnL-UAA, trnL-UAG, trnM-CAU, trnfM-CAU, trnN-GUU, trnP-UGG, trnQ-UUG, trnR-ACG, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC, trnV-UAC, trnW-CCA, trnY-GUA | trnA-UGC, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-UCC, trnH-GUG, trnI-CAU, trnI-GAU, trnL-CAA, trnL-UAA, trnL-UAG, trnM-CAU, trnfM-CAU, trnN-GUU, trnP-UGG, trnQ-UUG, trnR-ACG, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC, trnV-UAC, trnW-CCA, trnY-GUA | trnA-UGC, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, trnG-GCC, trnG-UCC, trnH-GUG, trnI-CAU, trnI-GAU, trnK-UUU, trnL-CAA, trnL-UAA, trnL-UAG, trnM-CAU, trnN-GUU, trnP-UGG, trnQ-UUG, trnR-ACG, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC, trnV-UAC, trnW-CCA, trnY-GUA | trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnH-GUG, trnI-CAU, trnfM-CAU, ΨtrnM-CAU, trnN-GUU, trnP-UGG, trnQ-UUG, trnS-GCU, trnS-UGA, trnT-GGU, ΨtrnV-GAC*, trnW-CCA, trnY-GUA | trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnH-GUG, trnI-CAU, trnfM-CAU, trnL-UAG, trnM-CAU, trnN-GUU, trnP-UGG, trnQ-UUG, trnR-ACG, trnR-UCU, trnS-UGA, trnS-GCU, trnW-CCA, trnY-GUA |
| Photosystem I | psaA, psaB, psaC, psaI, psaJ | psaA, psaB, psaC, psaI, psaJ | psaA, psaB, psaC, psaI, psaJ | ΨpsaB | |
| Photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | psbA*, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | ||
| Cytochrome b6/f complex | petA, petB, petD, petG, petL, petN | petA, petB, petD, petG, petL, petN | petA, petB, ΨpetD, petG, petL, petN | ||
| Photosynthesis – others | rbcL, ccsA, ycf3, ycf4 | rbcL, ΨccsA, ycf3, ycf4 | rbcL, ccsA*, ycf3, ycf4 | ΨccsA | |
| NADH-dehydrogenase | ndhA, ndhB, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | ndhA, ndhB, ndhC, ndhD, ndhE, ndhF, ΨndhG, ndhH, ndhI, ndhJ, ΨndhK | ΨndhA, ndhB, ΨndhC, ΨndhD, ΨndhE, ΨndhF, ndhG, ΨndhH, ΨndhI, ΨndhJ, ΨndhK | ΨndhB | |
| RNA polymerase | rpoA, rpoB, rpoC1, rpoC2 | rpoA, rpoB, rpoC1, rpoC2 | rpoA, rpoB, rpoC1, rpoC2 | ||
| ATP synthase | atpA, atpB, atpE, atpF, atpH, atpI | atpA, atpB, atpE, ΨatpF, atpH, atpI | atpA, atpB, atpE, atpF, atpH, atpI | ΨatpB | |
| Others | matK, infA, cemA, accD, ΨclpP, Ψycf1 | matK, ΨinfA, cemA, ΨaccD, clpP, Ψycf2 | matK, infA, cemA, accD, clpP, Ψycf2 | matK, infA, accD, clpP | matK, infA, accD, clpP |
The names of genes situated within inverted repeats are in bold. Genes with copies both in IR and single-copy regions or that are situated partially in the IR and partially in single-copy regions are marked with an asterisk. Pseudogenes are marked with Ψ. If both the normal and pseudogenized copy of a gene are present in the genome, only the normal one is indicated here.