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Maximum likelihood tree (1,000 bootstrap replicates) showing the identity of Lake Bonney microbial eukaryote single amplified genomes (SAGs) recovered from enrichment culture MCM87. The SILVA and GenBank databases were used to assign the phylogenetic positions of eukaryote SAGs. The colors of the SAG sequences are correlated with the sorting parameters in Fig. 1. *, sequences from the natural eukaryote populations in Lake Bonney generated in a previous study (29).
