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. 2016 Jan 20;17(Suppl 2):13. doi: 10.1186/s12859-015-0855-y

Table 1.

Mapping of communication blocks between wild-type KIT and the D816V mutant

Wild type
Name A B C D E F G H I J K - -
Size (res.) 22 11 32 16 14 13 11 127 160 9 4 - -
Mutant
Name - B’ C’ D’ - - G’ H’ I’ J’ - L’ M’
Size (res.) - 12 20 18 - - 10 86 186 8 - 35 66
Overlap (%) - 96 65 76 - - 95 80 87 71 - - -

The overlap o ij between two blocks B i and B j, identified in the wild type and in the mutant, is evaluated as: o ij=2∗#(B iB j)/(#(B i)+#(B j)). Two blocks are defined as counterparts, namely X and X’ if: (i) X’ (resp. X) yields the maximum overlap with X (rest. X’) over all blocks in the mutant (resp. wild-type) protein; (ii) the overlap is greater than 60%