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. 2016 Jun 30;113(29):8230–8235. doi: 10.1073/pnas.1600354113

Table S2.

Exact protein masses as determined by denaturing LC-MS

Subunit Theoretical mass (Da) RT (min) Experimental mass (Da) Δ Mass (Da)
With transit peptide Without transit peptide
I 57,032 57,032 / / /
II 26,021 26,020 52.3-57.9 26,199 179
III 29,933 29,940 / / /
IV 19,572 17,150 35.8-37.8 17,297 147
Va 16,735 12,440 33.0-36.1 12,518 78
Vb 13,834 10,670 28.0-35.8 10,775 105
VIa 10,800 9,530 32.6-33.1 9,376 -154
VIb 10,156 10,030 27.0-29.6 10,094 64
VIc 8,610 8,480 29.6-31.5 8,615 135
VIIa 9,063 6,670 31.3-31.9 6,713 43
VIIb 9,065 6,360 / / /
VIIc 7,331 5,440 33.0-37.8 5,469 29
VIII 7,639 4,960 33.0-35.8 4,978 18
Σ 225,791 204,722 205,366 644

The theoretical masses obtained from the UniProt database, the retention time during LC-MS, the experimental masses, and the mass differences are given for each protein subunit. For proteins that contain a transit peptide, the masses with and without transit peptide are given. Subunits VIb and VIc include an initiator methionine, which is removed. Note that some proteins eluted over several minutes and multiple mass spectra were obtained. For these proteins the average masses were calculated. Subunits I, III, and VIIc were not identified by denaturing LC-MS.