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. 2016 Jul 6;113(29):E4151–E4160. doi: 10.1073/pnas.1605951113

Table 1.

Crystallographic data and refinement statistics

Dataset Native SeMet
Data collection*
 Source APS 24IDC APS 24IDC
 Wavelength, Å 0.979 0.979
 No. of crystals 1 1
 Space group P21 P3121
 Cell dimensions
  a,b,c, Å 88.51, 80.35, 97.33 58.1, 58.1, 347.1
  α,β,γ, ° 90, 116.58, 90 90, 90, 120
 Resolution, Å 44.3–2.41 (2.49–2.41) 49.8–2.55 (2.64–2.55)
 Completeness, % 98.0 (91.0) 99.0 (100.0)
 Total reflections 150,619 (12,207) 221,836 (18,312)
 Unique reflections 46,438 (4,285) 23,371 (2,261)
 Wilson B-factor 47.3 58.8
 Redundancy 3.2 (2.8) 9.5 (7.9)
Rmerge, % 6.1 (41.6) 7.9 (56.8)
 CC1/2, % 99.8 (81.0) 99.9 (94.5)
 CC*, % 100.0 (94.6) 100.0 (98.6)
 <I>/σ(I) 11.6 (2.3) 21.5 (3.5)
 FOM (Phaser – 4 Se) 0.19
 FOM (Resolve) 0.53
Refinement*
 Resolution, Å 44.3–2.41 (2.49–2.41) 49.8–2.55 (2.64–2.55)
 No. of reflections (work/free) 44,530/1,880 22,174/1,152
Rwork/Rfree, % 17.6 (24.5)/21.2 (29.4) 20.2 (28.6)/24.3 (28.4)
 No. of atoms 6,770 3,333
  Protein 6,587 3,301
  Ligand 14 1
  Water 169 31
 Average B-factors, Å2 58.6 89.0
  Protein 58.9 81.1
  Ligand 58.4 75.7
  Water 47.8 65.9
 rmsd
  Bond lengths, Å 0.002 0.004
  Bond angles, ° 0.61 0.70
 Molprobity
  Favored, % 96.1 (778) 95.3 (385)
  Allowed, % 100.0 (810) 100.0 (404)
  Outliers, % 0.0 (0) 0.0 (0)
 Clash score 100th percentile 100th percentile
 Molprobity score 100th percentile 100th percentile
PDB code 5FG0 5FG1
*

Statistics were calculated using Phenix (25); highest shell is indicated in parentheses; Friedel mates were averaged when calculating reflection statistics.

Calculated with the program Molprobity (26).