. 2016 Jul 27;7:1102. doi: 10.3389/fpls.2016.01102

Table 3.

Summary of the genome-wide significant associations for plant height identified by the MLM.

SNP^a	Chr.	Position (kb)	Allele	MAF^b	MLM^c	GLM^d	A-D^e	QTL^f	XP-CLR^g	Candidate gene	Annotation
Bn-A06-p7023598	A06	6472	A/C	0.38	5.6	6.8			6.7	BnaA06g12310	RACK1A
										BnaA06g12520	BEE1
Bn-A09-p32172515	A09	30,032	A/G	0.39	4.9	6.5	7 [1]	TN, 158	3.6	BnaA09g44210	BES1

SNP Only the peak SNP in a defined locus is shown.

MAF Minor allele frequency.

MLM –log₁₀(p) value of the SNP detected by MLM.

GLM –log₁₀(p) value of the SNP detected by GLM.

A–D –log₁₀(p) value of the SNP detected by the A-D test; the number in square brackets indicates the subpopulation in which the SNP was detected.

QTL name of the mapping population.

XP-CLR XP-CLR score of the nearest selection region of the peak SNP.