Table 6.

Additive, dominant and allele substitution effects of the nine SNPs on milk fatty acids traits of FASN in Chinese Holstein cattle

Locus	Genetic effect	C10:0	C12:0	C14:0	C14:1	C16:0	C16:1	C18:0	C18:1n9c	C18:2n6c	CLA	C14 INDEX	C16 INDEX	C18 INDEX	SFA	UFA	SFA/ UFA
rs136947640	a	−0.052	−0.011	0.315	0.070	−0.039	−0.056	0.169	−0.409	0.147*	0.000	0.462	−0.143	−0.570	0.390	−0.301	0.036
	d	−0.093	−0.082	0.186	0.063	−0.164	0.007	0.127	−0.409	0.244**	0.015	0.470	0.057	−0.465	0.029	−0.113	0.016
	α	−0.125	−0.075	0.461	0.120	−0.167	−0.050	0.269	−0.729	0.339**	0.012	0.831	−0.099	−0.934	0.412	−0.390	0.049
rs41919999	a	0.072*	0.074	0.192**	−0.011	−0.008	0.013	−0.186	−0.193	0.007	0.008	−0.226	0.024	0.194	0.150	−0.160	0.008
	d	0.090*	0.123*	0.080	0.022	−0.111	−0.021	0.012	−0.267	−0.021	−0.003	0.116	−0.041	−0.245	0.224	−0.308	0.022
	α	0.079**	0.084*	0.198**	−0.009	−0.017	0.012	−0.185	−0.214	0.005	0.007	−0.217	0.020	0.175	0.167	−0.183	0.010
rs132865003	a	−0.029	−0.020	0.034	0.024	−0.206	−0.014	0.058	0.246	0.027	−0.012	0.195	−0.009	0.030	−0.230	0.238	−0.011
	d	−0.026	−0.018	0.004	0.006	−0.256	0.035	−0.022	0.162	0.089*	0.005	0.046	0.139	0.157	−0.373	0.274	−0.019
	α	−0.047	−0.032	0.037	0.028	−0.376	0.009	0.043	0.354	0.087	−0.009	0.225	0.083	0.135	−0.479	0.421	−0.024
rs134340637	a	0.029	0.020	−0.034	−0.024	0.206	0.014	−0.058	−0.246	−0.027	0.012	−0.195	0.009	−0.030	0.230	−0.238	0.011
	d	−0.026	−0.018	0.004	0.006	−0.256	0.035	−0.022	0.162	0.089*	0.005	0.046	0.139	0.157	−0.373	0.274	−0.019
	α	0.047	0.032	−0.037	−0.028	0.376	−0.009	−0.043	−0.354	−0.087	0.009	−0.225	−0.083	−0.135	0.479	−0.421	0.024
rs41919992	a	−0.001	0.042	−0.022	0.008	0.297	−0.006	−0.007	−0.482**	0.012	0.004	0.080	−0.049	−0.326	0.350	−0.475*	0.033
	d	0.139**	0.250**	0.418**	0.030	0.510	−0.064	−0.235	−1.266**	0.010	−0.002	−0.022	−0.271**	−0.524	1.142**	−1.309**	0.091
	α	0.058	0.148*	0.155	0.021	0.513	−0.033	−0.107	−1.018**	0.016	0.003	0.071	−0.163	−0.547	0.834*	−1.029**	0.071
rs133498277	a	−0.011	0.032	−0.048	0.006	0.324	1.796	0.041	−0.453*	−0.003	0.003	0.081	−0.068	−0.384	0.376	−0.471*	0.033
	d	0.120**	0.229**	0.373**	0.027	0.537	1.740	−0.164	−1.249**	−0.008	−0.002	−0.026	−0.284**	−0.639	1.167**	−1.318**	0.092
	α	−0.062	−0.066	−0.208**	−0.005	0.094	1.819	0.111	0.080	0.000	0.004	0.092	0.053	−0.111	−0.122	0.092	−0.006
rs41919984	a	0.009	−0.036	0.048	−0.010	−0.308	−0.003	0.011	0.463*	−0.012	−0.005	−0.121	0.027	0.292	−0.323	0.445*	−0.030
	d	0.138**	0.258**	0.409**	0.027	0.559	−0.059	−0.233	−1.333**	0.012	−0.003	−0.042	−0.268**	−0.577	1.183**	−1.372**	0.095*
	α	0.067*	0.073	0.220**	0.001	−0.072	−0.028	−0.087	−0.100	−0.006	−0.006	−0.138	−0.086	0.049	0.176	−0.135	0.010
rs41919985	a	0.020	−0.020	0.087	−0.009	−0.305	0.000	−0.045	0.421*	−0.004	−0.006	−0.130	0.033	0.366	−0.302	0.415	−0.029
	d	0.125**	0.239**	0.361**	0.025	0.560	−0.063	−0.162	−1.290**	0.003	−0.001	−0.030	−0.278**	−0.677	1.164**	−1.344**	0.094*
	α	−0.032	−0.120	−0.064	−0.019	−0.539	0.026	0.022	0.962**	−0.005	−0.005	−0.117	0.150	0.650	−0.790*	0.978**	−0.068
rs41919986	a	−0.025	0.020	−0.073	0.006	0.293	−0.006	0.068	−0.415*	−0.001	0.004	0.092	−0.050	−0.414	0.318	−0.425	0.029
	d	0.122**	0.224**	0.350**	0.024	0.563	−0.072	−0.106	−1.301**	−0.017	−0.004	−0.032	−0.301**	−0.798	1.210**	−1.390**	0.097*
	α	0.026	0.113	0.072	0.016	0.528	−0.036	0.024	−0.957**	−0.008	0.002	0.079	−0.176	−0.746	0.822*	−1.004**	0.070

Note: a means additive effect; d means dominant effect; α means allele substitution effect. The asterisk (*) means the additive, dominant or allele substitution effect of the locus indicated differ at P < 0.05 and the asterisk (**) means the additive, dominant or allele substitution effect of the locus indicated differ at P < 0.01