Table 4.

Overview of identified unigenes related to the RNAi pathways in S. shirakii, and the RNAi-related unigene sequences are listed in the S4 Data.

Gene	Unigene	Length (bp)	E-Value	Identity	Species Homologue	ACCESSION
mirRNA
Ago-1	Unigene6375_SsASsL	1122	0	100%	L. migratoria	AGO85968
	Unigene24483_SsASsL	612	7.00 × 10−122	100%	L .migratoria	AGO85968
	Unigene10467_SsASsL	444	3.00 × 10−82	100%	L. migratoria	AGO85968
Loqs	Unigene5566_SsASsL	345	3.00 × 10−121	65%	T. castaneum	XP_966668
Drosha	Unigene22829_SsASsL	339	2.00 × 10−47	78%	T. castaneum	XP_967454
	Unigene718_SsASsL	300	3.00 × 10−67	74%	T. castaneum	XP_967454
	Unigene18278_SsASsL	312	3.00 × 10−51	78%	T. castaneum	XP_967454
Pasha	Unigene1479_SsASsL	672	5.00 × 10−27	59%	T. castaneum	XP_971282
Exportin-5	Unigene24927_SsASsL	1098	2.00 × 10−105	60%	T. castaneum	XP_974696
siRNA
Dicer-2	Unigene11038_SsASsL	531	4.00 × 10−88	87%	S. gregaria	AFY13245
	Unigene24754_SsASsL	237	7.00 × 10−65	78%	S. gregaria	AFY13245
Ago-2	Unigene19329_SsASsL	1737	0	88%	S. gregaria	AFY13246
			0	72%	L. migratoria	AGO85972
	Unigene24512_SsASsL	2742	0	78%	L. migratoria	AGO85972
			0	68%	S. gregaria	AFY13246
Sid-1	Unigene8511_SsASsL	234	4.00 × 10−142	96%	L. migratoria	AFQ00936
	Unigene18465_SsASsL	624	4.00 × 10−99	92%	L. migratoria	AFQ00936
	Unigene24347_SsASsL	474	2.00 × 10−75	99%	L. migratoria	AFQ00936
	Unigene10814_SsASsL	351	8.00 × 10−47	94%	L. migratoria	AFQ00936
	Unigene39691_SsASsL	201	7.00 × 10−29	92%	L. migratoria	AFQ00936
piRNA
Ago-3	Unigene11235_SsASsL	1062	4.00 × 10−92	45%	T. castaneum	EFA02921
Piwi3	Unigene24609_SsASsL	2439	0	49%	L. migratoria	AGO85971
Aub	Unigene11344_SsASsL	1212	8.00 × 10−135	54%	T. castaneum	XP_001811159
Zucchini	Unigene5197_SsASsL	684	1.00 × 10−20	32%	T. castaneum	EEZ99465
Eri-1	Unigene17265_SsASsL	609	4.00 × 10−121	93%	S. gregaria	JX516790