Table 1.
Summary of RNA-seq data.
| Sample name | Raw reads | Mappable reads | Mapping ratio (%) | Transcript numbera |
|---|---|---|---|---|
| NP+Cn (R1) | 42,062,288 | 35,774,552 | 85.1 | 30,821 |
| NP+Cn (R2) | 36,765,558 | 31,124,543 | 84.7 | 30,089 |
| NP+Sub (R1) | 44,113,122 | 37,409,430 | 84.8 | 28,520 |
| NP+Sub (R2) | 44,099,180 | 37,233,227 | 84.4 | 28,506 |
| Se+Sub (R1) | 47,984,450 | 40,354,579 | 84.1 | 31,640 |
| Se+Sub (R2) | 44,467,438 | 37,438,648 | 84.2 | 31,253 |
| SA+Sub (R1) | 53,740,514 | 45,434,813 | 84.5 | 31,256 |
| SA+Sub (R2) | 38,552,664 | 32,936,215 | 85.4 | 30,191 |
a
The transcripts with at least five mapped reads were considered as reliably detected transcripts.
R1 and R2 indicate two biological replicates.