Table 3.
The most significant SNPs in candidate genes located on four chicken chromosomes (GGA9, GGA14, GGA18, GGAZ) and three immune traits [immune response to keyhole limpet hemocyanin (KLH), natural antibodies for lipopolysaccharide (LPS) and lipoteichoic acid (LTA)]
| Trait | SNP ID | Genome build | Chromosome | Gene ID | Gene name |
|---|---|---|---|---|---|
| KLH | rs15820324 | 3.1 | 18 | JMJD6 | Jumonji domain containing 6 |
| LPS | rs14110239 | 3.1 | 18 | FOXJ1 | Forkhead box J1 |
| rs15946185 | 3.1 | 9 | EPHB1 | EPH receptor B1 | |
| rs16102750 | 3.1 | Z | PTGER4 | Prostaglandin E receptor 4 (subtype EP4) | |
| rs15731101 | 3.1 | 14 | PRKCB | Protein kinase C, beta | |
| LTA | rs14110519 | 3.1 | 18 | ITGB4 | Integrin, beta 4 |