Table 4. Output files for PSAnalyse.

Output file name	Format	Information
Input_name.details.csv	CSV	Detailed output that extracts and displays relevant data from PeakScanner (Sample name, Size, Height, Area, Size of Prev, Area of Prev, Size of Post, Area of Post) and also calculates and displays ‘Ratio to Prev’, ‘Ratio to Post’, ‘Tract Length’ and ‘Score’– 0 or 1 –based on tract length.
Input_name.tracts.csv	CSV	Contains tract length data for the 28 PV sites for each sample in a 96-well plate as a single table. ‘N’ is used for missing datapoints and datapoints that are identified as uncertain have the suffix ‘?’.
Input_name.scores.csv	CSV	Contains ON/OFF scores (1 or 0 respectively) only for all 28 PV sites for each sample in a 96-well plate as a single table. ‘N’ is used for missing datapoints and datapoints that are identified as uncertain have the suffix ‘?’.
Input_name.out.html	Html	Graphical visualisation of Output results for all 28 PV sites in each well (sample); allows easy identification of problematic results as these are coloured in red.